Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121598g00003 ATGGTTTCGAGTAGCCGAATTTCCGGTGGCCGCCGCGGTTGTCTTGTTGTTGTTCTAGCTGTTTGTTTCTTGCTGCTTATTAGTTGTGGCAAGATACATGGAACTTCCAGTGATATCTTCTGCTTGAAGAGTGTTAAAGCTTCACTCCATGACCCCAATAACTATTTACAGTCATGGGATTTCAACAACAACACAGAAGGGTTTATCTGCAGGTTCACTGGGGTTGAATGTTGGCATCCTGATGAGAATAGAGTCTTGAATCTCAAGTTGTCAAACATGGGACTGAAAGGGTCATTCCCTCGCGGCCTTGTGAATTGCTCGAGCTTAACAGGGCTAGATCTTTCGATCAACAAGCTTTCTCAGGCCATTCCGGAGGATATATCTAGGATTATTCAGTGGGTGACAAAACTTGATCTATCATCAAATGATTTTGAAGGGGACATACCTGTTTTGCTGGCGAATTGTACCTTCCTTAATGATCTCAAACTTGACAAAAACAGGCTCACCGGTCAAATTCCGTCGCAATTAGGCCAGCTTCCAAGGCTTAAGACATTTAGTGTGTCCAATAATCTTCTGACCGGGCAAATTCCGGGGTTTCAGCCGGGTATAGTGACGGCCGACAGTTTTGCGAATAATCCAGGCCTCTGTGGCAGTCCTTTGAATGCTTGCCAGAGTAACCTTTCTAACAGCAACACTGCAGTTATAGCCGGAGCAGCCGTTGGTGGTGTGACTTTTGCTGCATTGGTGGTGGGTGTTGCATTGTTCTTCTATGTGCGCCGTGTTTCTACCCGAAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAGGAGCATAAAGGGTACTAAACAAATAAAGGTTTCCATGTTTGAGAAGACAGTTACAAAAATTAAATTGAGTGATCTCATGAAGGCTACAAATGACTTCAGCAAAAGCAACATTATTGGGTCAGGAAGAACAGGAACCATTTACAAAGCTGTTCTTGATGATGGCACATCACTCATGGTAAAGAGATTGCAACAATCTCAACACTCAGNNNNNNNNNNCACATCTGAGATGGCTACTCTAGGGGCAGTGCAGCACAGAAACTTGGTTCCCCTCTTAGGTTTTTGTGTTGCCAAAAGGGAGAGGCTTGTGGTCTATAAAAATATGCCTAATGGCACCCTCCATGATCAATTGCATAAGCGAGCCGATGCGGGCACCATGGAGTGGTCCTTACGGCTCAAAATTGCAATTGGAGCAGCCAAAGGATTAGCATGGCTTCATCACAGCTGCAATCCCCGAATCATACACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTTGAGCCGAAAATCTCCGATTTCGGCCTCGCTAGACTGATGAACCCCATTGACACACATTTGAGCACTTTTGTGAATGGTGAGTTTGGTGATTTAGGCTATGTTGCTCCTGAATACACAAGAACTTTGCTGGCCACACCTAAGGGTGATGTTTATAGCTTTGGTGTTGTGCTTCTTGAGTTGGTAACATGCGAAAGACCTACTCACGTGACGAAAGCTCCGGAAACTTTCAAAGGGAACTTGGTAGAATGGATTCAGCAGCTCTCAAGCAACTCCCAACTCCGTGATGCCATCGACGAATCCCTAACCGGGAAGGGCGCCGATGATGAGCTTTTCCAATTCCTAAAGGTTGCATGCAACTGTGTTGTAGCAACCTCAAAGGAGAGGCCAACTATGTTTGAAGTTTACCAGCTTCTAAGAGCCATTGGGAGTAAATATAATTTTACAACAGAGGATGAAATTTTGGTACCTGCTGATACTGGTTATGCTGATAACTTAGAGGAGCTTATTGTAGCTCAAGAAGGAGGAAATGATTGA 1869 0.4446 MVSSSRISGGRRGCLVVVLAVCFLLLISCGKIHGTSSDIFCLKSVKASLHDPNNYLQSWDFNNNTEGFICRFTGVECWHPDENRVLNLKLSNMGLKGSFPRGLVNCSSLTGLDLSINKLSQAIPEDISRIIQWVTKLDLSSNDFEGDIPVLLANCTFLNDLKLDKNRLTGQIPSQLGQLPRLKTFSVSNNLLTGQIPGFQPGIVTADSFANNPGLCGSPLNACQSNLSNSNTAVIAGAAVGGVTFAALVVGVALFFYVRRVSTRKKEEDPEGNKWARSIKGTKQIKVSMFEKTVTKIKLSDLMKATNDFSKSNIIGSGRTGTIYKAVLDDGTSLMVKRLQQSQHSXXXXTSEMATLGAVQHRNLVPLLGFCVAKRERLVVYKNMPNGTLHDQLHKRADAGTMEWSLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLLATPKGDVYSFGVVLLELVTCERPTHVTKAPETFKGNLVEWIQQLSSNSQLRDAIDESLTGKGADDELFQFLKVACNCVVATSKERPTMFEVYQLLRAIGSKYNFTTEDEILVPADTGYADNLEELIVAQEGGND 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121598g00003 622 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 197 - -
Stsc121598g00003 622 Gene3D Transferase(Phosphotransferase) domain 1 384 601 - -
Stsc121598g00003 622 CDD STKc_IRAK 315 583 - -
Stsc121598g00003 622 CDD TM_EGFR-like 228 266 - -
Stsc121598g00003 622 Pfam Protein tyrosine and serine/threonine kinase 312 581 IPR001245 GO:0004672|GO:0006468
Stsc121598g00003 622 FunFam Nuclear pore complex protein NUP107 35 198 - -
Stsc121598g00003 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 270 383 - -
Stsc121598g00003 622 Gene3D Ribonuclease Inhibitor 37 225 IPR032675 -
Stsc121598g00003 622 SUPERFAMILY Protein kinase-like (PK-like) 286 583 IPR011009 -
Stsc121598g00003 622 Pfam Leucine rich repeat N-terminal domain 37 78 IPR013210 -
Stsc121598g00003 622 Gene3D Phosphorylase Kinase; domain 1 270 382 - -
Stsc121598g00003 622 SUPERFAMILY L domain-like 36 197 - -
Stsc121598g00003 622 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Stsc121598g00003 622 FunFam Leucine-rich repeat receptor-like protein kinase 384 594 - -
Stsc121598g00003 622 ProSiteProfiles Protein kinase domain profile. 309 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121598g00003 Stsc-Chr121598 18754 21532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121598g00003 18 597 Receptor kinase-like Gene Family AT3G28450 45.578 1.64e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc121598g00003 PK_Tyr_Ser-Thr 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121598g00003 - - gmx:100817267 924.85