Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121597g00001 ATGGATTATTCAGAAATTGAAATTCCTGAACCATTTTTGTGCCCAATTTCACTTCACCTAATGAGAGAGCCTGTTACTGTTTCAACAGGAATCACGTATGATAGAGAATTCATAGAGAGATGGCTATTCTCATGCAAGAATTTCACTTGCCCTGTTACAAAGCAACAGGTTTTGCAAACACAAGATCTTACTCCAAACCACACTCTTCAAAGGCTGATCCAAAGTTGGTGCACTCATAATCATGTCTCACTTGATGAAACAACTCAGCATGATTCAAGTTCAACCATTGAAAAAGCTCAAGTTGTGAATCTCTTGAATGAAGCAAAGGGGTTTTCACATGATGAGAAATTGAAGTTTCTCAAATGGATTAAAACAATTGCTCTTGAGAGTGAAAGTAACAAGCAGTGTTTGCAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACCATGGATGAAGCAGATTCAACTTTGTTGATCATTGAAGCAGGTACTGAACTCCTGTTTAAACTGAATCCTTCAATGTATCAGCTAAAATATCTTATAAACAATGAAAAGATTCAGTTTTTTGAGTCATTGTTTCGTGTACTGAGACATGGAAACCAAGAATCTAGAACTTATGCAACATTGCTATTGAAATCATCTTTTGGGGTGGCCAATAATCCAACCCAATTGAGTTGTGTCAAAACCGAATTTTTTGTCGAAATTTCAAGAGTGATAAGGGACAAGATCTCACAAGAAGCTTCCAAGGCCGCGCTAAAGCTTCTTGTGGATCTTTGTTCCTGGGCAAGGAACAGGGTCAAAGCAGTCGAGGCCGACATAGTACTAAACCTCATTGATCTCCTCATTGATAGTAACAATGTTTCCGAAAGACGGACTTGTGAACTCATATTGATAGCTCTGGATAGGCTCTGCAGCTGTGCAGAAGGGCGCGCCGCCTTGTTGAGCCATGGTGCCGGAGTTGCCATCATTTCAAAGAAGATTCTGAGGGTTTCTTGCGTTGCAAGCGATAGAGGTGTTAAGATTTTGGCCATAGTTTGTAGGTATTCAGCAACACCTAATTTGCTTCAAGAGATGTTAGTAGTTGGTGCTGTTTCTAAGTTGTGTTTGGTACTTCAAATGGATAATAATGGGGTTTTCAATAAGGCTAAGGAGAGGGCTAGTGAGATTCTTAAGTTGCATTCAAAGGTTTGGAAGAATTCCCCATGTATTCCTCTTAATTTGCTTTCAATCTATCCATGA 1239 0.3955 MDYSEIEIPEPFLCPISLHLMREPVTVSTGITYDREFIERWLFSCKNFTCPVTKQQVLQTQDLTPNHTLQRLIQSWCTHNHVSLDETTQHDSSSTIEKAQVVNLLNEAKGFSHDEKLKFLKWIKTIALESESNKQCLQSAGAIDFLASTMDEADSTLLIIEAGTELLFKLNPSMYQLKYLINNEKIQFFESLFRVLRHGNQESRTYATLLLKSSFGVANNPTQLSCVKTEFFVEISRVIRDKISQEASKAALKLLVDLCSWARNRVKAVEADIVLNLIDLLIDSNNVSERRTCELILIALDRLCSCAEGRAALLSHGAGVAIISKKILRVSCVASDRGVKILAIVCRYSATPNLLQEMLVVGAVSKLCLVLQMDNNGVFNKAKERASEILKLHSKVWKNSPCIPLNLLSIYP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121597g00001 412 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Stsc121597g00001 412 SUPERFAMILY ARM repeat 190 374 IPR016024 -
Stsc121597g00001 412 CDD RING-Ubox_PUB 9 63 IPR045210 -
Stsc121597g00001 412 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Stsc121597g00001 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Stsc121597g00001 412 PANTHER WDSAM1 PROTEIN 4 404 IPR045185 GO:0061630
Stsc121597g00001 412 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Stsc121597g00001 412 SUPERFAMILY RING/U-box 4 83 - -
Stsc121597g00001 412 Gene3D - 96 399 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121597g00001 Stsc-Chr121597 24384 25643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121597g00001 5 412 U-box Gene Family AT2G35930 47.922 3.00e-125 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121597g00001 - - gmx:100778012 467.618