Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121584g00003 ATGTTATTACCACCCATGTCCAGAATTGTCTTATTATTCCTCTTCTATGTCATTGTGCAACTCTCTTCACCCCAATTAGCCCAAGCTGATGACAAGAGTGAAGAAGCAAGTGCACTCTTAAAGTGGAAGGCCACCCTTGACAACAACAGCCAGCTAATCCTCTCATCTTGGAACAACAGAACCACTGCATGCAAATGGCGTGGAATTCAATGTGATAAGTCAAAGTCCTCTATCACAACCATCAATCTTGAAAACTTTGGACTCAAAGGTACACTCCACACACTCTCCTTCTCTTCATTCCCCAACCTCATTACCATAAACATCTACAATAACTTATTCCATGGAACCATTCCCCCACAGATTGCTAACTTGTCCAGAGTTAATACCTTGAACCTCTCCAAAAACTTCTTTGAAGGTTCAATCCCTAAAGAGATCTTCACCTTGACAAGTCTACAGGGTCTTGATCTTTTTCAATGCAATCTAAGTGGCCAAATCCCTGACTCTATAGGAAATTTGGCCAACTTAACATATCTAGACTTTGGAAACAACAGTCTTTCTGGCCACATTCCTACTGGGATTGGCAAATTGATCAACCTTGGGTATCTTTCTTTTATAGATAATCATCTTTCTGGTTCCATTCCAATGGAAATAGGAATGATGACAAACCTTGAGTCAATTGATTTCTCAGACAACAAACTCTCTGGGGCTATCCCTTCTACCATTGGTAACTTGAGTAATTTGAATGTACTTTACCTTTCTAACAACACACTCTCTGGGCCGATCCCACCCTCTATCTGGAACATGTCTAACTTGACCTTGTTAATGCTTAACAGCAATAATCTTTCTGGTTCCATCCCTACTTCCATAGAAAACTTGGTCAATTTGGGTTACCTTGGACTTGATGTCAATCACTTTTCTGGATCCATTCCTCCCACACTTGGAAACTTGACAAACCTTGTTGAATTATACCTGGGCTTCAACAATTTTTCTGGACCAATTCCTGCCTCTTTAGGTAATCTCATCAATTTGGATGTCTTGAGCCTCCAATCCAACAAACTCTATGGAACTGTTCCTGACACAATTGGAAACTTGAAGGGCCTCTCTGTACTGGAATTGTCAACAAATCACCTTAATGGCACTATTCCTGAGAGCATTAATAACTTGACAATGTTGCAGTACTTTTTAGTGGCCAATAACAACTTCACTGGCCATTTGCCACCTCAAATCTGCTCAGGTGGATCACTTTCATACTTCAATGCTGATCACAACCATTTTAGTGGTCCAGTTCCAATAAGCTTGAAGAATTGCTCAAATATTGCTAGAATCAAGTTAGAGAGCAACCTTTTGGAAGGTGACATTGCAGAAATTTTTGGCATATATCCAAGTTTGGAACATGTTGATCTTAGTGAAAACAAGTTTTATGGTCACATTTCACCAAATTGGGGGAAGTGCCATAATCTTGAGAACTTTCTCTTGTCCAACAATAATATTTCTGGTGTTATCCCACCAGAAATTGTTGGGGCTACTAATCTAGGTAGGCTTTATCTTTCTTCAAACCAACTGAATGGAAAGATTCCAAAAGAACTTGGGAATATGAAAAACTTGTTTGAACTCAAGATCAGCAACAATCATCTCTCAGGAAACATTCCAACAGAAATAGGATCATTGAAGGATCTGACAATCTTGCACCTAGCAGGAAATGAGTTGAGTGGCAACATAGCAAGAGAAGTTATGCAGTTACCCAAATTGTTGGAATTGAACTTGAGCATCAACAGACTAGTGGGAAGCATCCCCTCCGGCGTTGGCTCGTTGCAACCTCTCTCTTCTCTTGATCTTAGCAGCAATTTGTTGAACGGAAGTATACCAGAGTGGCTTGGAGATTTGAAGTCGTTGAACTTGTTGAACCTTTCACACAATGATCTCTCTGGCAAGATTCCATCAAGTTTTGATGGCATGTCAGCTTTGATTTCTGTCAACATATCATACAACCAATTAGAAGGGTCGCTTCCAAACAATCAAGCCTTTCGTAATGCTTCGATTGATTCCTTGAAAAATAACAAAGGCTTGTGTGCTAATAATGTCACTGGCTTGGAGCCATGCACAAAGAAGCATAGCAAAAAGATGGCATTGTTTCTTATCTTCGGAGCACTAGCAGTAGCACTAGCACTTTGTGTGGTGGGTGTAACTGTTTATATTCTTTGTAGAAGAGGCAGAAAGAAAGAAGACATGGCTAAAGAAGTGTTATCAGAAGAACACTTTTCCATATGGAGCCATGATGGGAAAATGGCATTTGAAACAATCATCAAAGCTACCAACAATTTTGATGACAAATATCTCATTGGAATTGGAGGGCAAGGATCTATTTACAAGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTCAAGAAGCTTCATGAGAAGACTACTATTGATGAGGAGTCATACAATGTGAAAGCATTTGAGAACGAAATCAAAGCATTGACAGAAATGAAGCACCGCAACATCATAAAGCTATATGGGTTTTGCCAGCATTCACGGTTCTCATTTTTGGTTTATAAGTTCTTGGAAGGTGGCAGCTTGAATCAGGTGCTGAGTGATGAAGCACAAGCAAGTGAATTTGATTGGGAAAAGAGGGTGAATGTGGTTAAAGGAGTTGCTAATGCTTTGTCATATATGCATCATGATTGCATACCCCCTATTGTTCATCGCGACATATCAAGCAAGAATGTCCTTTTGGATTCAGAATATGAAGCTCACGTCTCTGATTTTGGGACAGCTAAGTTTCTAAAGCCAGATTCAAGTTGGACAACACTTGTACTCACTTATGGCTATGGAGCTCCTGAGCTAGCTCAGACCATGGAAGTGACAGAGAAAAGTGATGTATATAGCTTGGGAGTGCTTTGTTTGGAGATCATGATGGGAAAGCATCCAGGAGATCTGATAAACTCATTGTTGTCACCATCAACAGCATCAATAACATACAATCTGTTATTGGTTGATGTCATAGATCAGAGGCCTCCTCATCCAAAGAATTCAGTTGCTGGGGAAATCATGTGGATCACAAAGTGGGCACTTGAGTGCTTGAGACAAAGTCCACAATCACGACCGAGCATGTATCAAATTTCTAAAGAGCTTATGATGGGAAAGTCACCTTTAGCCAATGACCAGTTTCCTATGATCAGAATTGGACAACTCATTGAAGATTAA 3207 0.4019 MLLPPMSRIVLLFLFYVIVQLSSPQLAQADDKSEEASALLKWKATLDNNSQLILSSWNNRTTACKWRGIQCDKSKSSITTINLENFGLKGTLHTLSFSSFPNLITINIYNNLFHGTIPPQIANLSRVNTLNLSKNFFEGSIPKEIFTLTSLQGLDLFQCNLSGQIPDSIGNLANLTYLDFGNNSLSGHIPTGIGKLINLGYLSFIDNHLSGSIPMEIGMMTNLESIDFSDNKLSGAIPSTIGNLSNLNVLYLSNNTLSGPIPPSIWNMSNLTLLMLNSNNLSGSIPTSIENLVNLGYLGLDVNHFSGSIPPTLGNLTNLVELYLGFNNFSGPIPASLGNLINLDVLSLQSNKLYGTVPDTIGNLKGLSVLELSTNHLNGTIPESINNLTMLQYFLVANNNFTGHLPPQICSGGSLSYFNADHNHFSGPVPISLKNCSNIARIKLESNLLEGDIAEIFGIYPSLEHVDLSENKFYGHISPNWGKCHNLENFLLSNNNISGVIPPEIVGATNLGRLYLSSNQLNGKIPKELGNMKNLFELKISNNHLSGNIPTEIGSLKDLTILHLAGNELSGNIAREVMQLPKLLELNLSINRLVGSIPSGVGSLQPLSSLDLSSNLLNGSIPEWLGDLKSLNLLNLSHNDLSGKIPSSFDGMSALISVNISYNQLEGSLPNNQAFRNASIDSLKNNKGLCANNVTGLEPCTKKHSKKMALFLIFGALAVALALCVVGVTVYILCRRGRKKEDMAKEVLSEEHFSIWSHDGKMAFETIIKATNNFDDKYLIGIGGQGSIYKAELPSGMVVAVKKLHEKTTIDEESYNVKAFENEIKALTEMKHRNIIKLYGFCQHSRFSFLVYKFLEGGSLNQVLSDEAQASEFDWEKRVNVVKGVANALSYMHHDCIPPIVHRDISSKNVLLDSEYEAHVSDFGTAKFLKPDSSWTTLVLTYGYGAPELAQTMEVTEKSDVYSLGVLCLEIMMGKHPGDLINSLLSPSTASITYNLLLVDVIDQRPPHPKNSVAGEIMWITKWALECLRQSPQSRPSMYQISKELMMGKSPLANDQFPMIRIGQLIED 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121584g00003 1068 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 389 704 - -
Stsc121584g00003 1068 SMART LRR_typ_2 244 267 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 220 243 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 268 292 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 316 339 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 652 677 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 580 604 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 532 556 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 388 412 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 124 148 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 340 364 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 172 196 IPR003591 -
Stsc121584g00003 1068 SMART LRR_typ_2 628 651 IPR003591 -
Stsc121584g00003 1068 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 284 - -
Stsc121584g00003 1068 PRINTS Leucine-rich repeat signature 628 641 - -
Stsc121584g00003 1068 PRINTS Leucine-rich repeat signature 607 620 - -
Stsc121584g00003 1068 SUPERFAMILY RNI-like 346 672 - -
Stsc121584g00003 1068 SMART serkin_6 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121584g00003 1068 Gene3D Ribonuclease Inhibitor 289 369 IPR032675 -
Stsc121584g00003 1068 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Stsc121584g00003 1068 Gene3D Ribonuclease Inhibitor 191 288 IPR032675 -
Stsc121584g00003 1068 PANTHER LEUCINE RICH REPEAT KINASE 2 337 1049 - -
Stsc121584g00003 1068 FunFam Nuclear pore complex protein NUP107 32 190 - -
Stsc121584g00003 1068 Gene3D Ribonuclease Inhibitor 370 702 IPR032675 -
Stsc121584g00003 1068 ProSitePatterns Tyrosine protein kinases specific active-site signature. 900 912 IPR008266 GO:0004672|GO:0006468
Stsc121584g00003 1068 Pfam Leucine rich repeat 486 545 IPR001611 GO:0005515
Stsc121584g00003 1068 Pfam Leucine rich repeat 607 665 IPR001611 GO:0005515
Stsc121584g00003 1068 Pfam Leucine rich repeat 221 281 IPR001611 GO:0005515
Stsc121584g00003 1068 Gene3D Phosphorylase Kinase; domain 1 735 854 - -
Stsc121584g00003 1068 SUPERFAMILY RNI-like 81 402 - -
Stsc121584g00003 1068 Pfam Protein kinase domain 776 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121584g00003 1068 Gene3D Transferase(Phosphotransferase) domain 1 855 1056 - -
Stsc121584g00003 1068 FunFam Leucine-rich repeat receptor protein kinase MSP1 737 854 - -
Stsc121584g00003 1068 FunFam MDIS1-interacting receptor like kinase 2 isoform A 285 385 - -
Stsc121584g00003 1068 ProSiteProfiles Protein kinase domain profile. 774 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121584g00003 1068 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Stsc121584g00003 1068 SMART LRR_sd22_2 316 345 - -
Stsc121584g00003 1068 SMART LRR_sd22_2 364 390 - -
Stsc121584g00003 1068 SMART LRR_sd22_2 268 294 - -
Stsc121584g00003 1068 SMART LRR_sd22_2 172 195 - -
Stsc121584g00003 1068 SMART LRR_sd22_2 220 246 - -
Stsc121584g00003 1068 FunFam MDIS1-interacting receptor like kinase 2 855 1051 - -
Stsc121584g00003 1068 Coils Coil 810 830 - -
Stsc121584g00003 1068 SUPERFAMILY Protein kinase-like (PK-like) 760 1045 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121584g00003 Stsc-Chr121584 23373 26919 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121584g00003 34 947 Receptor kinase-like Gene Family AT4G08850 44.995 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc121584g00003 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121584g00003 - - gmx:100815688 1335.86