Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121584g00001 ATGCTACCCATGTCTCAGAAACTTGTCTTCATATTCCTCTTTGTCCTGATTATTGTAAAGTTGTGTTCAGTTGCAAGTGAAAAGAGTGAAGCAAATGCACTCTTAAAGTGGAAGGCCAGCCTTGATAACCAAAGCCAAGTTGTTTTATCATCTTGGAAGAACGGGACAAGTCCATGCACAAGATGGAGGGGAATTCAATGTGATACATCCAATTCCGTAACCGCCATCAGTCTTGAAAATAATATGCTCCAAGGTACACTCCATGCTCTAGACTTTTCCTCACTCCCCAACCTCCTCACCTTTAACATCTACAACAACAAATTTCATGGAGCCATTCCACCACAAATTGGTAACTTGTCCAAAATCAATCGTTTGAACTTTTCTTTAAATCCCTTTCATGGTTCCATCCCTCAAGAGATGTGGTCACTCACGAGCTTAAGCTCACTGGATTTTTACTACTGTAATTATCTAACAGGACCCATCTCTCCTTCCATTGGAAATTTGACAAATTTATCATATCTGGATTTTAGTGGCAACAATCTCTCCTGCTCTATTCCTCCTGAAATTGGCAAACTCAACAACCTTGCCTTTCTTGCTATTGAGTCTAGTAACATTGTTGGTCCCATTCCCCGTGAAATTGGAATGTTGTCAAATCTAGAGTATATTGATTTCACAGAAAACAATATCTCTGGCAATATCCCTTCTACAATTGCTAACATGAGCAGGCTAAATCAAATTTTACTAGCTAACAACACCCTCTCTGGCCTAATCCCACCCTCCCTGTGGACCATGTCTAACCTGACCACCTTATGGCTTCATGCCAATCAGCTTTCTGGGAATATCCCTACCTCAGTAGGAAACTTGGTTAATTTGGAGTCCCTTAATGTTTTGGACAACCAACTTTCTGGATCAATTCCTTCCACAATTGGCAACATGACAAAGCTCACAGAAATATCTCTGTGCTTCAATTCTTTTTCTGAGTCAATTCCTGCTTCTGTTGGTAATTTGATCAACTTGGTAACCTTATGCCTCCAGGACAACAACCTCTCTGGATCTATTCCTGACACAATTGGAAACTTAAAAAGGCTCTCCGTATTAGAGTTGTCTGACAACATGCTTAGTGGCAACATTCCACAAGCCATTAACAATCTTACCAACATGAATGACTTTTTTGTAGCCAACAATGGTCTCACTGGCCACTTGCCGCCTCAAATCTGCTTAGGTGGTTCACTAGAGCACTTCAATGTTCAAAACAACCATTTTACCGGTCCAGTACCTAGTAGCTTGAAGAACTGCTCTAGTATTCTCATGATAACTTTACAGGATAACCATTTGGAAGGAGACATATCACAAGTCTTTGGTGTTTATCCATATTTGTATTACATTAATCTAAGCAACAATAAATTTTATGGCCAAATTTCACCAAACTGGGCCAAGTGCAATAGTCTTCAATACTTGATCATCGCCAACAATAGTATTTCCGGTGGTATATCGTCACAAATTGCTGAGGCTACCAACCTGGGCAGGCTTCACCTTTTTTCAAACCAACTGACTGGAAATATTCCAAAAGAACTGGGGAAGATGAGAAACTTGCTTGAACTCAAGATTGGCGACAATCATCTTTCTGGAAAGATTCCATCCGAGATAGGATTGTTGCAAGCTCTCAATCACTTGCATCTAGGAGGAAATGACTTGACTGGCAACATACCGAGACAAGTTGTTGAGTTACCTAACTTGTTGGAATTGAACTTGAGCAACAACAAATTAGGGGGAAGCATACCCTCTGACTTCAACTCATTGCAACCTCTCTATTCTCTTGATCTCAGTGGGAATTTGTTGAATGGAACAATACCATCAGTGCTTGGAGAGTTGAAGCACTTGCAATGGTTGAATCTCTCTCGCAACAATCTGTCTGGCAATATTCCATCCAGTTTTGATGGCATGTCAGCCTTGATTTCTGTCAACATATCATACAACCAGTTAGAGGGGCCGCTTCCAAACAATAAAGCCTTTCTTAATGCTCCAATTGGATCCTTGAAAAGTAACAAAGGCTTGTGTGCTAATAACGTCACTGGCTTGGTGCCATGCCCAAGCAGCAGTCCTAGCAGCAAAAGTCACAAGGTGGTGTTATTGGTTTTACTTGTTATCTTTGGAGTACTAGCACTATCACTTTCTGTGATTGCTGTTTCAGTATATATTCTTTGTAGAAAAGCAAGAAAGAAAGAAGATCCTGCTAAAGAAATGCAGAGAGAAGAACACTTTTCCATATGGAGCCATGATGGAAAAATGGCATTTGAAACAATCATTGAAGCTACCAATAATTTTGATGACAAATATCTCATCGGAATTGGAGGGCAAGGATCCGTATACAGGGCTGAGTTGCCTTCAGGTATGGTTGCTGTGAAGAAACTTCATCCGGAATCAGATGCAGAGGACAAATACAATTTGAAAGCATTTGAGAATGAAATCAAAGCATTGACAGAAATCAGGCACCGCAACATCATAAAGCTATATGGATTTTGCCAACACTCACGCTTCTCATTTTTGGTTTACAAGTTCTTGGAAGGTGGAAGTTTGGATCAACTACTTGTTATTGAAAAACAAGCAATTGAATTTGATTGGGAGAGGAGGGTGAATGTGGTGAAAGGAGTTGCTAATGCTTTGTCTTATATGCATCATGATTGCAAACCTCCGATAGTTCACCGTGACGTATCAAGCAAGAATGTCCTTTTGGATTCAGAATATGAAGCTCATGTCTCTGATTTTGGAACTGCTAAGGTTCTGAAGCCAGGTTCAAATTTGACAACACTTGCTGTCACCTATGGCTATGGAGCTCCAGAGCTTGTTCAAACTATGGATGCCACCGAAAAATGTGATGTATATAGCTTTGGAGTGCTTTGTTTTGAAATCCTTCTGGGAAAACATCCAGCAGATTTCATAAGTTCATTGTTGTCACCATCAACAGCATCAATAACATACAAGTTGTTATTGGTTGATGTCATAGATCAGAGGCCTCCCCATCCTGAGAAGTCAGTGGTTGGGGAAATAATGTTGATCACTAAGTGGGCACTTAAGTGTTTGAGCCAGAGTCCACAATTTCGGCCAACCATGCATCAAGTTTCTAAGGAACTCATGATGGGAAAAGCACCTTTCCATGATGAGCACTTTCCCATGATCAGACTTGGACAACTCAATGAAGAATTGGAAAGTCCACTTATGTGA 3222 0.405 MLPMSQKLVFIFLFVLIIVKLCSVASEKSEANALLKWKASLDNQSQVVLSSWKNGTSPCTRWRGIQCDTSNSVTAISLENNMLQGTLHALDFSSLPNLLTFNIYNNKFHGAIPPQIGNLSKINRLNFSLNPFHGSIPQEMWSLTSLSSLDFYYCNYLTGPISPSIGNLTNLSYLDFSGNNLSCSIPPEIGKLNNLAFLAIESSNIVGPIPREIGMLSNLEYIDFTENNISGNIPSTIANMSRLNQILLANNTLSGLIPPSLWTMSNLTTLWLHANQLSGNIPTSVGNLVNLESLNVLDNQLSGSIPSTIGNMTKLTEISLCFNSFSESIPASVGNLINLVTLCLQDNNLSGSIPDTIGNLKRLSVLELSDNMLSGNIPQAINNLTNMNDFFVANNGLTGHLPPQICLGGSLEHFNVQNNHFTGPVPSSLKNCSSILMITLQDNHLEGDISQVFGVYPYLYYINLSNNKFYGQISPNWAKCNSLQYLIIANNSISGGISSQIAEATNLGRLHLFSNQLTGNIPKELGKMRNLLELKIGDNHLSGKIPSEIGLLQALNHLHLGGNDLTGNIPRQVVELPNLLELNLSNNKLGGSIPSDFNSLQPLYSLDLSGNLLNGTIPSVLGELKHLQWLNLSRNNLSGNIPSSFDGMSALISVNISYNQLEGPLPNNKAFLNAPIGSLKSNKGLCANNVTGLVPCPSSSPSSKSHKVVLLVLLVIFGVLALSLSVIAVSVYILCRKARKKEDPAKEMQREEHFSIWSHDGKMAFETIIEATNNFDDKYLIGIGGQGSVYRAELPSGMVAVKKLHPESDAEDKYNLKAFENEIKALTEIRHRNIIKLYGFCQHSRFSFLVYKFLEGGSLDQLLVIEKQAIEFDWERRVNVVKGVANALSYMHHDCKPPIVHRDVSSKNVLLDSEYEAHVSDFGTAKVLKPGSNLTTLAVTYGYGAPELVQTMDATEKCDVYSFGVLCFEILLGKHPADFISSLLSPSTASITYKLLLVDVIDQRPPHPEKSVVGEIMLITKWALKCLSQSPQFRPTMHQVSKELMMGKAPFHDEHFPMIRLGQLNEELESPLM 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121584g00001 1073 SUPERFAMILY RNI-like 76 399 - -
Stsc121584g00001 1073 FunFam MDIS1-interacting receptor like kinase 2 isoform A 279 381 - -
Stsc121584g00001 1073 FunFam Nuclear pore complex protein NUP107 27 161 - -
Stsc121584g00001 1073 FunFam MDIS1-interacting receptor like kinase 2 854 1050 - -
Stsc121584g00001 1073 Gene3D Ribonuclease Inhibitor 391 696 IPR032675 -
Stsc121584g00001 1073 SMART LRR_sd22_2 360 386 - -
Stsc121584g00001 1073 SMART LRR_sd22_2 600 626 - -
Stsc121584g00001 1073 SMART LRR_sd22_2 216 242 - -
Stsc121584g00001 1073 SMART LRR_sd22_2 264 290 - -
Stsc121584g00001 1073 SMART LRR_sd22_2 168 197 - -
Stsc121584g00001 1073 Gene3D Phosphorylase Kinase; domain 1 735 853 - -
Stsc121584g00001 1073 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 162 257 - -
Stsc121584g00001 1073 ProSitePatterns Tyrosine protein kinases specific active-site signature. 899 911 IPR008266 GO:0004672|GO:0006468
Stsc121584g00001 1073 Pfam Leucine rich repeat 603 661 IPR001611 GO:0005515
Stsc121584g00001 1073 Pfam Protein kinase domain 777 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121584g00001 1073 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Stsc121584g00001 1073 Gene3D Ribonuclease Inhibitor 240 310 IPR032675 -
Stsc121584g00001 1073 Gene3D Ribonuclease Inhibitor 141 239 IPR032675 -
Stsc121584g00001 1073 SUPERFAMILY L domain-like 427 687 - -
Stsc121584g00001 1073 Gene3D Transferase(Phosphotransferase) domain 1 854 1054 - -
Stsc121584g00001 1073 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 384 700 - -
Stsc121584g00001 1073 FunFam Leucine-rich repeat receptor protein kinase MSP1 737 853 - -
Stsc121584g00001 1073 Gene3D Ribonuclease Inhibitor 311 390 IPR032675 -
Stsc121584g00001 1073 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 357 1045 - -
Stsc121584g00001 1073 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Stsc121584g00001 1073 ProSiteProfiles Protein kinase domain profile. 775 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121584g00001 1073 SMART LRR_typ_2 168 192 IPR003591 -
Stsc121584g00001 1073 SMART LRR_typ_2 624 647 IPR003591 -
Stsc121584g00001 1073 SMART LRR_typ_2 576 599 IPR003591 -
Stsc121584g00001 1073 SMART LRR_typ_2 95 119 IPR003591 -
Stsc121584g00001 1073 SMART LRR_typ_2 264 288 IPR003591 -
Stsc121584g00001 1073 SMART LRR_typ_2 528 552 IPR003591 -
Stsc121584g00001 1073 SMART LRR_typ_2 384 408 IPR003591 -
Stsc121584g00001 1073 SMART LRR_typ_2 336 360 IPR003591 -
Stsc121584g00001 1073 SUPERFAMILY Protein kinase-like (PK-like) 757 1044 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121584g00001 Stsc-Chr121584 5604 9138 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121584g00001 13 946 Receptor kinase-like Gene Family AT4G08850 43.882 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc121584g00001 Pkinase 4.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121584g00001 - - aip:107635237 1342.02