Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121581g00006 ATGACCATATCAATGGTATTGTGCAATCCATCAACACAACCAATGCTAAATGTTCCTTGCAATGGCCCAAAACTGATCAATGCTAAGCACAAAGAGAAGGTGGTTTTGGTGATGGGAGCGACCGGGACGGGGAAATCCCGGCTCTCCATCGACCTTGGGACATGTTTTCCATCAGAGATCATCAACTCCGACAAAATTCAAGCCTATCAAGGGCTAGAAATAGCCACAAACAAGGTCACAAAGGAAGAACAACGAGGCGTGCCACATCATTTGCTAGGGATACATAATCCCTACTCTGAGTTCACGGCCAATGATTTCTGTGACATGGCCTCGTTGGCCATGGAATCAATCATTGGCCGCGAACAACTCCCGATCATAGTCGGGGGATCAAATTCCTATGTGGAAGCATTAGTAGAAAGATTTGGTTCAAAGTATGAGTGGCTTATTCTTTGGTTGGATGTATCAATGCCAATTCTCCATTCCTATGTGTCAAAAAGAGTGGAGGACATGGTTGAGAAGGGAATGGTGAATGAATTGAGACCCTTTTTCAGTCCCAATGGGGACTACTCAAAAGGGATAAGAAAAGCAATTGGGGTGCCAGAATTCGACATGTTCTTTCGAAGTGAAGAGACAACATGGGATGATGAGAGAACTAAGCAGAGGTTGTTTGATGAAGCTATCATGGAAGTGAAGCTGAACACGTGCAGATTGGCTTGCAAGCAGTTTGAGAGGATTCAGAGGCTTAGGAATGTGAAGAGATGGAAAATGCATCGTGTTTGTGCGACAAGAGTGTTTGAAATGCATGGAAATGATGAAGAAGCAGATGAAGCGTGGAGGAAGATGGTGGCAGAGCCGAGTAAGAGATTAGTAGCAGAGTTTCTGTATAATGAAGCCATTAATAGTGTTTCTGCTGGGATTAGTGTGACTGGTTCTTCTGTATCTTGCAGAGTTGTCAAGTGTTAA 963 0.4403 MTISMVLCNPSTQPMLNVPCNGPKLINAKHKEKVVLVMGATGTGKSRLSIDLGTCFPSEIINSDKIQAYQGLEIATNKVTKEEQRGVPHHLLGIHNPYSEFTANDFCDMASLAMESIIGREQLPIIVGGSNSYVEALVERFGSKYEWLILWLDVSMPILHSYVSKRVEDMVEKGMVNELRPFFSPNGDYSKGIRKAIGVPEFDMFFRSEETTWDDERTKQRLFDEAIMEVKLNTCRLACKQFERIQRLRNVKRWKMHRVCATRVFEMHGNDEEADEAWRKMVAEPSKRLVAEFLYNEAINSVSAGISVTGSSVSCRVVKC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121581g00006 320 FunFam Adenylate isopentenyltransferase 5, chloroplastic 156 256 - -
Stsc121581g00006 320 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 156 256 - -
Stsc121581g00006 320 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 293 IPR039657 -
Stsc121581g00006 320 Pfam IPP transferase 67 141 - -
Stsc121581g00006 320 Pfam IPP transferase 144 244 - -
Stsc121581g00006 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 145 IPR027417 -
Stsc121581g00006 320 Gene3D - 31 294 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121581g00006 Stsc-Chr121581 15831 17016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121581g00006 142 298 C2H2 Transcription Factor Family AT2G27760 29.670 1.54e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121581g00006 K10760 - gmx:100777757 392.119