Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121581g00005 ATGGAATCGAAGATGTCCTTTACTTCTGGAGGAACTAGCTGCCATGTTACTGGTTCAGCTGCTGAGGATGATCCAAACATGCAAGATGCTGTTGCAACTGAAGAAGGGAGTGGGAGCCAGTGGAGTTTCCTCCCAAAACCATCTCATCATAACTATGTTCAGTATCTGACTGAATCCTCAGCCTATCTGCCTAAGACTGAGGATATGATTGGGAGCAATTATGCAGCTCTTGGATTTGGAAACGATGCCAATGGAACAAACATGAACTTCTTTTGTAATGATCCTGGAAAAGCTTATGGCTTTAAAATTGAGGTTCATTCTTCCAATGAAGTAGACATTGCCAAGCAAGTTGGGTATTGGAGACCTGTTGAGAGTGAAGTTCAGCAGGAAGCAATGCAATTTGAGAATACTCAACATCATCATCCTCTCTATCTTGAGAGTACTGCTTCATGGACATCAGAAACAATTGGAGATAATCCTAATGTTTCACGGCTTGATCCATCGATAATGGCTGGCACACCTAGTTTCCTTCCTAAACCAGGATGTAGCTCAATATCAAAGCAGAAAGCCAGTGACCGGCAACGCAGGCAACGAATTTCTGATAATCTGAAAGCACTACACGATTTGCTTCCAAATCAAGCAGAGGGTAGTCAAGCATATATACTGGACGACATTATTGACCATGTTAAATATTTGCAGCTTCAACTAAAGGAACTAAGTGGAAGAAGACTGCAAGCTGAATCAACTGCTATACCACTTGTTTTCCATGAGCAGGGTTATGGACATTATATTGACCAGCAGAAGCTGAATGAACCTCTTGAAGAGATGATGGGGAAACTTCTTGAAGAGAATCCTGCATCTGCCAGTCAGCTTCTGGAGAGCAATGGCCTGGTCCTGCTGCCAATGGATTTGGTTCAAGACTTGCACCAATCCATACAAATCTTTGGCAACGGCACTGCACTGTAA 966 0.4296 MESKMSFTSGGTSCHVTGSAAEDDPNMQDAVATEEGSGSQWSFLPKPSHHNYVQYLTESSAYLPKTEDMIGSNYAALGFGNDANGTNMNFFCNDPGKAYGFKIEVHSSNEVDIAKQVGYWRPVESEVQQEAMQFENTQHHHPLYLESTASWTSETIGDNPNVSRLDPSIMAGTPSFLPKPGCSSISKQKASDRQRRQRISDNLKALHDLLPNQAEGSQAYILDDIIDHVKYLQLQLKELSGRRLQAESTAIPLVFHEQGYGHYIDQQKLNEPLEEMMGKLLEENPASASQLLESNGLVLLPMDLVQDLHQSIQIFGNGTAL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121581g00005 321 MobiDBLite consensus disorder prediction 169 197 - -
Stsc121581g00005 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Stsc121581g00005 321 SMART finulus 189 238 IPR011598 GO:0046983
Stsc121581g00005 321 Pfam Helix-loop-helix DNA-binding domain 189 233 IPR011598 GO:0046983
Stsc121581g00005 321 CDD bHLH_AtbHLH_like 191 240 IPR045239 -
Stsc121581g00005 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 304 - -
Stsc121581g00005 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 248 IPR036638 GO:0046983
Stsc121581g00005 321 MobiDBLite consensus disorder prediction 1 16 - -
Stsc121581g00005 321 Gene3D - 184 251 IPR036638 GO:0046983
Stsc121581g00005 321 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121581g00005 Stsc-Chr121581 10677 13828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121581g00005 191 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 36.975 4.99e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121581g00005 HLH 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121581g00005 - - cam:101507064 316.62