Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121578g00004 ATGGTGAGGATTCCCACACAGGATGAAGAGAGGAGATCCTTGCTTGAGCAGCAGTTCAAATCTGAAGTTGCTTTGCTTTCACGTCTCTTTCATCCAAACATAGTTCAGTTTATTGCAGCTTGTAAAAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAGCCATACTCTCTTTCAATTGAAACAATACTAAGGTTAGCTCTTGACATATCTAGGGGAATGGAGTACCTTCACTCGCAAGGCGTCATCCACAGAGATCTCAAGTCAAATAACCTTCTTCTCAACGACGAGATGAGGGTTAAGGTGGCGGATTTTGGCACATCATGTCTCGAAACAAGGTGTCGCGAGACCAAAGGAAACATGGGAACGTATCGTTGGATGGCGCCAGAGATGATTAAGGAGAAACCCTACACTCGCAAAGTTGATGTGTATAGCTTTGGTATTGTGCTTTGGGAACTCACAACTGCTTTGCTTCCCTTCCAAGGAATGACCCCTGTCCAAGCTGCTTTTGCTGTTGCTGAGAAGAATGAGAGGCCACCGCTGCCGGCGAGTTGTCAGCCAGCACTAGCACACCTGATAAAGCGTTGCTGGGCAGCAAACCCATCAAAGAGGCCAGACTTCAGTGACATAGTGGCAACTCTTGAGAAGTATGATGAATGTGTGAAGGAGGGACTTCCCCTAACTCATCATTCAAGACTTGCTGTCAGCAGAAACCTCATTGAACGCTTAAAAGGCTGCGTCTCCATGAGTTCCTCCATACCTGTACATGCTTAA 813 0.46 MVRIPTQDEERRSLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVATLEKYDECVKEGLPLTHHSRLAVSRNLIERLKGCVSMSSSIPVHA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121578g00004 270 SUPERFAMILY Protein kinase-like (PK-like) 14 227 IPR011009 -
Stsc121578g00004 270 PRINTS Tyrosine kinase catalytic domain signature 154 176 IPR001245 GO:0004672|GO:0006468
Stsc121578g00004 270 PRINTS Tyrosine kinase catalytic domain signature 135 145 IPR001245 GO:0004672|GO:0006468
Stsc121578g00004 270 PRINTS Tyrosine kinase catalytic domain signature 51 64 IPR001245 GO:0004672|GO:0006468
Stsc121578g00004 270 PRINTS Tyrosine kinase catalytic domain signature 198 220 IPR001245 GO:0004672|GO:0006468
Stsc121578g00004 270 PRINTS Tyrosine kinase catalytic domain signature 89 107 IPR001245 GO:0004672|GO:0006468
Stsc121578g00004 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 95 107 IPR008271 GO:0004672|GO:0006468
Stsc121578g00004 270 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 230 - -
Stsc121578g00004 270 Gene3D Transferase(Phosphotransferase) domain 1 1 249 - -
Stsc121578g00004 270 PIRSF ILK 1 239 - -
Stsc121578g00004 270 Pfam Protein tyrosine and serine/threonine kinase 7 227 IPR001245 GO:0004672|GO:0006468
Stsc121578g00004 270 FunFam serine/threonine-protein kinase HT1 56 249 - -
Stsc121578g00004 270 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121578g00004 270 CDD STKc_MAP3K-like 15 227 - -
Stsc121578g00004 270 SMART serkin_6 9 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121578g00004 Stsc-Chr121578 11007 13473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121578g00004 1 261 MAP Kinase Kinase Kinase AT1G62400 89.695 2.31e-179 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc121578g00004 PK_Tyr_Ser-Thr 3.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121578g00004 - - gmx:100799437 521.161