Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121572g00005 ATGCTTCCTTCCCATTTCTATAATGAGCATAAGAGGGAGTTTTGTCCACAGTTAATGTTCCAGAACGAATTTGGAAACTCTTTCATACTTAATCTTAAGATGGAACCAGATGTTGGTCTAATATATGGTGGATTTAAGAAAATTCTTGCACACCACAACATCAACGGCGGGAGAATCATAATAGCCACTTACAATGGGAGTTGCATATTCAGGTTTAGAATTGTTGAATGTAATGAAGAAGACCTTCTTCCTTACATTATTAGTAACCCCCACTACAGCCACCTACAACCTCAACAAAAAAGCCGTCATATTAATGAAATTAGTGGATGTCTTTCCGTAAACCCATTTCAAACTCAATCCAATGAAAATCAATCACATCAAAATTTGCTTTCTTTCCCTCTGGCCAGCACAAAAGCCAAACAGCCTATAGAGCCAGACATACAAAACGATTCATGTCGCCATAGAAGAAATGCCAGAGGAAATACCACCCAAATCTCGAATAAAAACAGGAAAGCCAAGACTTATGAATCAGACCAAGACTCGTGTTTGCAAACAAAGCGGCCCAAAGGTTGGCTATGTTATTTGGTCGCCATGGTCGATGGGGAATATGTGGTTGAAAAACCTGTTAGGAATTATCACCTCACGCAGTATACAATGAATGTTCCGAGACAACTCCTGGAGGTTGGGTTCACTCATGATCCAAAACATATTATAGTCATTGACAACTCTTCAAAGACGTATACCGTCCGTGTTAGAAATAAGTCTAAAAAACGGAAAACCATGGTGTTGGGTAGGGGCTGGAAAAAATTTCAAGTTGCTAATGATTTGAGGAAGGGAGACGTTATCAAAATGTGTTTCGATCCAAAATATCCTTATCATCTCCGTTGTGTTGTCCATAGAGCTCAGCTATTTTGA 915 0.3923 MLPSHFYNEHKREFCPQLMFQNEFGNSFILNLKMEPDVGLIYGGFKKILAHHNINGGRIIIATYNGSCIFRFRIVECNEEDLLPYIISNPHYSHLQPQQKSRHINEISGCLSVNPFQTQSNENQSHQNLLSFPLASTKAKQPIEPDIQNDSCRHRRNARGNTTQISNKNRKAKTYESDQDSCLQTKRPKGWLCYLVAMVDGEYVVEKPVRNYHLTQYTMNVPRQLLEVGFTHDPKHIIVIDNSSKTYTVRVRNKSKKRKTMVLGRGWKKFQVANDLRKGDVIKMCFDPKYPYHLRCVVHRAQLF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121572g00005 304 ProSiteProfiles B3 DNA-binding domain profile. 204 302 IPR003340 GO:0003677
Stsc121572g00005 304 MobiDBLite consensus disorder prediction 145 173 - -
Stsc121572g00005 304 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 42 284 IPR039218 -
Stsc121572g00005 304 Pfam B3 DNA binding domain 210 283 IPR003340 GO:0003677
Stsc121572g00005 304 SUPERFAMILY DNA-binding pseudobarrel domain 204 294 IPR015300 -
Stsc121572g00005 304 Gene3D - 197 300 IPR015300 -
Stsc121572g00005 304 SMART B3_2 205 300 IPR003340 GO:0003677
Stsc121572g00005 304 CDD B3_DNA 207 289 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121572g00005 Stsc-Chr121572 21197 22803 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc121572g00005 B3 3.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121572g00005 - K16573 gra:105792694 45.0542