Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121572g00004 ATGTCAAGTCCTCGTTCAACAATCGCTATCCCCATACATGCTTCATTTTTAATGTTCCAGAACGAATTTGGAAACTCTTTCATACTTAATCTTAAGATGGAACCAGATGTTGGTCTAATATATGGTGGATTTAAGAAAATTCTTGCACACCACAACATCAACGGCGGGAGAATCATAATAGCCACTTACAATGGGAGTTGCATATTCAGGTTTAGAATTGTTGAATGTAATGAAGAAGACCTTCTTCCTTACATTATTAGTAACCCCCACTACAGCCACCTACAACCTCAACAAAAAAGCCGTCATATTAATGAAATTAGTGGATGTCTTTCCGTAAACCCATTTCAAACTCAATCCAATGAAAATCAATCACATCAAAATTTGCTTTCTTTCCCTCTGGCCAGCACAAAAGCCAAACAGCCTATAGAGCCAGACATACAAAACGATTCATGTCGCCATAGAAGAAATGCCAGAGGAAATACCACCCAAATCTCGAATAAAAACAGGAAAGCCAAGACTTATGAATCAGACCAAGACTCGTGTTTGCAAACAAAGCGGCCCAAAGGTTGGCTATGTTATTTGGTCGCCATGGTCGATGGGGAATATGTGGTTGAAAAACCTGTTAGGAATTATCACCTCACGCAGTATACAATGAATGTTCCGAGACAACTCCTGGAGGTTGGGTTCACTCATGATCCAAAACATATTATAGTCATTGACAACTCTTCAAAGACGTATACCGTCCGTGTTAGAAATAAGTCTAAAAAACGGAAAACCATGGTGTTGGGTAGGGGCTGGAAAAAATTTCAAGTTGCTAATGATTTGAGGAAGGGAGACGTTATCAAAATGTGTTTCGATCCAAAATATCCTTATCATCTCCGTTGTGTTGTCCATAGAGCTCAGCTATTTTGA 912 0.3925 MSSPRSTIAIPIHASFLMFQNEFGNSFILNLKMEPDVGLIYGGFKKILAHHNINGGRIIIATYNGSCIFRFRIVECNEEDLLPYIISNPHYSHLQPQQKSRHINEISGCLSVNPFQTQSNENQSHQNLLSFPLASTKAKQPIEPDIQNDSCRHRRNARGNTTQISNKNRKAKTYESDQDSCLQTKRPKGWLCYLVAMVDGEYVVEKPVRNYHLTQYTMNVPRQLLEVGFTHDPKHIIVIDNSSKTYTVRVRNKSKKRKTMVLGRGWKKFQVANDLRKGDVIKMCFDPKYPYHLRCVVHRAQLF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121572g00004 303 SUPERFAMILY DNA-binding pseudobarrel domain 203 293 IPR015300 -
Stsc121572g00004 303 Pfam B3 DNA binding domain 209 282 IPR003340 GO:0003677
Stsc121572g00004 303 CDD B3_DNA 206 288 IPR003340 GO:0003677
Stsc121572g00004 303 SMART B3_2 204 299 IPR003340 GO:0003677
Stsc121572g00004 303 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 41 283 IPR039218 -
Stsc121572g00004 303 MobiDBLite consensus disorder prediction 144 172 - -
Stsc121572g00004 303 ProSiteProfiles B3 DNA-binding domain profile. 203 301 IPR003340 GO:0003677
Stsc121572g00004 303 Gene3D - 196 299 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121572g00004 Stsc-Chr121572 21197 22803 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc121572g00004 B3 3.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121572g00004 - K16573 gra:105792694 45.0542