Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121569g00006 ATGGACTTCGGAATTTCAGCGGTGTTTCCATTTGTTGTGAAGACTGCATTTGAGCTTGGAATCTTTGACATAATAGCCAAAGCTGGTGGTGAACATGCAAAGCTCTCAGCTCAAGACATTGCTTCACAGATTGGTGGCAAGAACCCTAATGCACCATCAATGGTGGATCGTCTTCTTAGGCTTCTTGCAAGTCATTCTTTCTTGTCTTATTCATCACTTTCTCCTCAAGATGATAATCGCCACCAAACCAATCTACAAGATGAAGATGATCAAGAACATGGGCTTATTGCATCTCCACAGAAGATTGTTTATAGTCTCACAGCTGCTTCCAAATATTTTGCAACTGATGATGATGGTTTCAGTTTTGGACATGCTTTGAACTTGATTCTCGATAAGGTCAACTTGGAAGTCTGGTCAGTTTACCACAAAACTTTTAACTTTTATTGTATTAGAATTTGGTTAAGTGTCTAG 471 0.3928 MDFGISAVFPFVVKTAFELGIFDIIAKAGGEHAKLSAQDIASQIGGKNPNAPSMVDRLLRLLASHSFLSYSSLSPQDDNRHQTNLQDEDDQEHGLIASPQKIVYSLTAASKYFATDDDGFSFGHALNLILDKVNLEVWSVYHKTFNFYCIRIWLSV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121569g00006 156 FunFam Caffeic acid 3-O-methyltransferase 1 113 - -
Stsc121569g00006 156 SUPERFAMILY "Winged helix" DNA-binding domain 5 81 IPR036390 -
Stsc121569g00006 156 Gene3D - 6 146 IPR036388 -
Stsc121569g00006 156 Pfam Dimerisation domain 12 63 IPR012967 GO:0046983
Stsc121569g00006 156 PANTHER O-METHYLTRANSFERASE 6 140 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121569g00006 Stsc-Chr121569 27052 28576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121569g00006 1 142 Monolignol Biosynthesis Gene Families AT5G54160 32.394 3.28e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121569g00006 K13066 - aip:107626705 176.022