Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121569g00002 ATGCTTTTTGCAATGGACTTCGGAGTTTCAGCGGTGTTTTCATTTGCTGTGAAGACTGCATTTGAGCTTGGAATCTTTGACATAATAGCCAAAGCTGGTGGTGAACATGCAAAGCTCTCAGCTCAAGACATTGCTTCACAGATTGGTGGCAAGAACCCTAATGCACCATCAATGGTGGATCGTCTTCTTAGGCTTCTTGCAAGTCATTCTATGTTGTCTTATTCATTACTTCCTCCTCAAGATGATAATCGCCACCAAACCGATCTACAAGTCACCAAAGATGAAGATGATCAAGAACATGGGCTTATTGCATCTCCACAGAAGATTGTTTATAGTCTCACAGCTGCTTCCAAATATTTTGCAACTGATGANNNNNNNNNNTATGGTTTCAGTTTTGGACATTCTTTAAACATGATTATGGATAAGGTCTACTTGGAAACCTGGAGCCAACTGAAAGGAGCAATATTGGAAGGAGGTATGCCATTCAATAGGGTCCATGGGATGGACTTTTTTGAGTACACAAGTGTAGATTCAAGGTTCAATGATGTTTTCAACAAAGCTATGCTAAACCACACAACCATAGTGATGAAGAGGGTTCTTGAGTGCTATGATGGTTTCAACAACATTAACACACTTGTTGATGTTGGTGGTGGTCTTGGCATCAATCTCAAAATGATCACTTCCAAATATCCAAATATCAATGCTATTAACTTTGACTTGCCTCATGTTATTGAACATGCCCCCAACTATGCCGGTGTGGAACATGTAGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTCATGAAGTGGATACTTCATGATTGGAGTGATGAACAATGCATGAAGGTGTTGAAGAATTGCCACAAGGCCATTCCTGAGGATGGAAAAGTGATAGTTGTAGAAACAATGGTTCCAGTTTTGCCGGAGAATACAAAAGCTGCTCAGGCTGCTTTCAAAGGTGACTTATTTATGATGACTCAAGACATTGGAGGAAAAGAGAGAACAAAGCATGAGTTCATTCAATTGGCCAAGGCTTCTGGATTTTCTGCCATCAAATTTGTTTGCTCTGCTTCTATATATTGGGTTATGGAGTTCTACAAGTAA 1116 0.3978 MLFAMDFGVSAVFSFAVKTAFELGIFDIIAKAGGEHAKLSAQDIASQIGGKNPNAPSMVDRLLRLLASHSMLSYSLLPPQDDNRHQTDLQVTKDEDDQEHGLIASPQKIVYSLTAASKYFATDXXXXYGFSFGHSLNMIMDKVYLETWSQLKGAILEGGMPFNRVHGMDFFEYTSVDSRFNDVFNKAMLNHTTIVMKRVLECYDGFNNINTLVDVGGGLGINLKMITSKYPNINAINFDLPHVIEHAPNYAGVEHVGGDMFESVPNGDAIFMKWILHDWSDEQCMKVLKNCHKAIPEDGKVIVVETMVPVLPENTKAAQAAFKGDLFMMTQDIGGKERTKHEFIQLAKASGFSAIKFVCSASIYWVMEFYK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121569g00002 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 370 IPR029063 -
Stsc121569g00002 371 PIRSF O-mtase 1 371 IPR016461 GO:0008168
Stsc121569g00002 371 FunFam Caffeic acid 3-O-methyltransferase 1 93 - -
Stsc121569g00002 371 Pfam Dimerisation domain 16 67 IPR012967 GO:0046983
Stsc121569g00002 371 FunFam Caffeic acid O-methyltransferase 125 371 - -
Stsc121569g00002 371 SUPERFAMILY "Winged helix" DNA-binding domain 2 84 IPR036390 -
Stsc121569g00002 371 Gene3D - 1 120 IPR036388 -
Stsc121569g00002 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Stsc121569g00002 371 Gene3D Vaccinia Virus protein VP39 127 371 IPR029063 -
Stsc121569g00002 371 PANTHER O-METHYLTRANSFERASE 7 369 IPR016461 GO:0008168
Stsc121569g00002 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 5 371 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121569g00002 Stsc-Chr121569 9101 13932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121569g00002 2 371 Monolignol Biosynthesis Gene Families AT5G54160 48.378 2.29e-121 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121569g00002 K13066 - adu:107473077 525.398