LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121569g00002	ATGCTTTTTGCAATGGACTTCGGAGTTTCAGCGGTGTTTTCATTTGCTGTGAAGACTGCATTTGAGCTTGGAATCTTTGACATAATAGCCAAAGCTGGTGGTGAACATGCAAAGCTCTCAGCTCAAGACATTGCTTCACAGATTGGTGGCAAGAACCCTAATGCACCATCAATGGTGGATCGTCTTCTTAGGCTTCTTGCAAGTCATTCTATGTTGTCTTATTCATTACTTCCTCCTCAAGATGATAATCGCCACCAAACCGATCTACAAGTCACCAAAGATGAAGATGATCAAGAACATGGGCTTATTGCATCTCCACAGAAGATTGTTTATAGTCTCACAGCTGCTTCCAAATATTTTGCAACTGATGANNNNNNNNNNTATGGTTTCAGTTTTGGACATTCTTTAAACATGATTATGGATAAGGTCTACTTGGAAACCTGGAGCCAACTGAAAGGAGCAATATTGGAAGGAGGTATGCCATTCAATAGGGTCCATGGGATGGACTTTTTTGAGTACACAAGTGTAGATTCAAGGTTCAATGATGTTTTCAACAAAGCTATGCTAAACCACACAACCATAGTGATGAAGAGGGTTCTTGAGTGCTATGATGGTTTCAACAACATTAACACACTTGTTGATGTTGGTGGTGGTCTTGGCATCAATCTCAAAATGATCACTTCCAAATATCCAAATATCAATGCTATTAACTTTGACTTGCCTCATGTTATTGAACATGCCCCCAACTATGCCGGTGTGGAACATGTAGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTCATGAAGTGGATACTTCATGATTGGAGTGATGAACAATGCATGAAGGTGTTGAAGAATTGCCACAAGGCCATTCCTGAGGATGGAAAAGTGATAGTTGTAGAAACAATGGTTCCAGTTTTGCCGGAGAATACAAAAGCTGCTCAGGCTGCTTTCAAAGGTGACTTATTTATGATGACTCAAGACATTGGAGGAAAAGAGAGAACAAAGCATGAGTTCATTCAATTGGCCAAGGCTTCTGGATTTTCTGCCATCAAATTTGTTTGCTCTGCTTCTATATATTGGGTTATGGAGTTCTACAAGTAA	1116	0.3978	MLFAMDFGVSAVFSFAVKTAFELGIFDIIAKAGGEHAKLSAQDIASQIGGKNPNAPSMVDRLLRLLASHSMLSYSLLPPQDDNRHQTDLQVTKDEDDQEHGLIASPQKIVYSLTAASKYFATDXXXXYGFSFGHSLNMIMDKVYLETWSQLKGAILEGGMPFNRVHGMDFFEYTSVDSRFNDVFNKAMLNHTTIVMKRVLECYDGFNNINTLVDVGGGLGINLKMITSKYPNINAINFDLPHVIEHAPNYAGVEHVGGDMFESVPNGDAIFMKWILHDWSDEQCMKVLKNCHKAIPEDGKVIVVETMVPVLPENTKAAQAAFKGDLFMMTQDIGGKERTKHEFIQLAKASGFSAIKFVCSASIYWVMEFYK	371

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121569g00002	371	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	131	370	IPR029063	-
	Stsc121569g00002	371	PIRSF	O-mtase	1	371	IPR016461	GO:0008168
	Stsc121569g00002	371	FunFam	Caffeic acid 3-O-methyltransferase	1	93	-	-
	Stsc121569g00002	371	Pfam	Dimerisation domain	16	67	IPR012967	GO:0046983
	Stsc121569g00002	371	FunFam	Caffeic acid O-methyltransferase	125	371	-	-
	Stsc121569g00002	371	SUPERFAMILY	"Winged helix" DNA-binding domain	2	84	IPR036390	-
	Stsc121569g00002	371	Gene3D	-	1	120	IPR036388	-
	Stsc121569g00002	371	Pfam	O-methyltransferase domain	148	353	IPR001077	GO:0008171
	Stsc121569g00002	371	Gene3D	Vaccinia Virus protein VP39	127	371	IPR029063	-
	Stsc121569g00002	371	PANTHER	O-METHYLTRANSFERASE	7	369	IPR016461	GO:0008168

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121569g00002	Stsc-Chr121569	9101	13932	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121569g00002	2	371	Monolignol Biosynthesis Gene Families	AT5G54160	48.378	2.29e-121	353

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121569g00002	K13066		-	adu:107473077	525.398

Showing 1 to 1 of 1 entries