Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121566g00004 ATGGACGGCTACGATGGAACCGTTAGGCTCGGAGCCATAAACCTCAAGCACCATGATCTTCGTGCCGGCGCCGCCGCCGAATTTGACTCCGGACCTGATGTTTCAGTTTCCTCGCCGGTCACCAGGCAGAAAGCCGCCGCCGCCAAACAGTTCATCGAGAATCACTACAAGAATTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGTAGAGAGCTACAAAGGAAAGTGCAGGAGGCTCAAATATCAGTTGAAGAGCGGGAGGAGATGATGAGGAATTTGGAGCGGAGAGAAACCGAGTATATGAGGCTTCAGAGACGTAAAGTTGGAATTGATGATTTTGAGCAATTGACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGACTATGTCGTGCTAAAGGTACAGGAGAGATTTTTGCCATGAAGAAGTTAAAGAAGTCAGAAATGCTTAGCCGCGGACAGGTCGAACATGTTCGATCAGAGAGGAACTTGCTGGCAGAGGTTGACAGTAGATGCATAGTAAAACTCCATTACTCATTCCAAGATGCAGATTTCTTATATCTAATCATGGAGTATTTACCTGGTGGTGACATTATGACATTGTTGATGAGAGAAGATATTCTTTCTGAGGATGTGGCTCGTTTCTACATTGCTGAAAGCATTCTTGCTATTCACTCAATACATCAGTACAACTATGTCCACAGGGATATAAAACCAGATAACCTGATACTGGATAAAAATGGTCATTTGAAGCTTTCGGACTTTGGATTATGTAAGCCTCTTGATGATAAGTATTCAAGTATATTGGAGAATGAAGATTTTACCAGTCAAGAATCAACTAGTGAAACTGATGGATACTCTGCATCCCCTTGGTTGATGCCAAAGGAACAATTACAGCAGTGGAAACGTAATCGTCGTACTTTGGCATATTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGTTATGGAATGGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCTTTCTGTTCTGATGATCCAAGGATGGCCTGCCGTAAGATTGTTAACTGGAGAACATGCCTGAAATTCCCTGAAGAACCCAAGATATCAGCTGAAGCTAAGGATCTCATATGCAGCTTAATATGTGATGTTGAAACTAGACTAGGAACCAGAGGAGGAATAGAAGAAATAAAGGCTCATCCATGGTTCAAGACTGTTCAGTGGGATCTGCTTTATGAATCGGAGGCTGCATTTAAACCTACAGTCACTGGAGAGTTGGATACACAAAATTTTGAGAAGTTTCCTGACGTAGAAGGTCCACCATCTGTAACTGCAACTGTAGGACCTTGGCGGAAGATGTTGACATCCAAAGACACCAATTTCATAGGATATACTTATAAGAAATCAGACATTCTTAAATCACTTGAAAGTTCAGGTGCAGACGTCAAAGTAAATGGATCATCAAATGGCCCATCCTTGATATCCTTGTTAGGTAGGATTGATTTGCAAGATACCGTCATTCCAGAAACAGAGCAGAAGCCATAA 1578 0.4252 MDGYDGTVRLGAINLKHHDLRAGAAAEFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRELQRKVQEAQISVEEREEMMRNLERRETEYMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDADFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQYNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILENEDFTSQESTSETDGYSASPWLMPKEQLQQWKRNRRTLAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWRTCLKFPEEPKISAEAKDLICSLICDVETRLGTRGGIEEIKAHPWFKTVQWDLLYESEAAFKPTVTGELDTQNFEKFPDVEGPPSVTATVGPWRKMLTSKDTNFIGYTYKKSDILKSLESSGADVKVNGSSNGPSLISLLGRIDLQDTVIPETEQKP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121566g00004 525 FunFam Non-specific serine/threonine protein kinase 312 432 - -
Stsc121566g00004 525 ProSiteProfiles Protein kinase domain profile. 114 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121566g00004 525 CDD MobB_NDR_LATS-like 48 109 - -
Stsc121566g00004 525 Pfam Protein kinase C terminal domain 433 477 IPR017892 GO:0004674|GO:0005524|GO:0006468
Stsc121566g00004 525 CDD STKc_NDR_like 112 478 - -
Stsc121566g00004 525 SMART serkin_6 114 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121566g00004 525 SMART pkinase_C_6 415 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc121566g00004 525 Gene3D Transferase(Phosphotransferase) domain 1 200 431 - -
Stsc121566g00004 525 SUPERFAMILY Protein kinase-like (PK-like) 91 466 IPR011009 -
Stsc121566g00004 525 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Stsc121566g00004 525 FunFam Non-specific serine/threonine protein kinase 198 265 - -
Stsc121566g00004 525 Gene3D Phosphorylase Kinase; domain 1 105 199 - -
Stsc121566g00004 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 452 - -
Stsc121566g00004 525 FunFam Non-specific serine/threonine protein kinase 85 197 - -
Stsc121566g00004 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Stsc121566g00004 525 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 487 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc121566g00004 525 Coils Coil 63 107 - -
Stsc121566g00004 525 Pfam Protein kinase domain 114 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121566g00004 Stsc-Chr121566 18683 24787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121566g00004 1 515 AGC Kinase Gene Family AT5G09890 77.457 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc121566g00004 Pkinase 3.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121566g00004 K08790 - gmx:100814085 946.421