Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121566g00003 ATGAACACCCTTTTAGCCCCCAAAACAGCTATAGAACATGAACTCAAGAAGCTAAAGAACAAGAGCTATAACAGGGTTTTCTTGATTCTACAATCTTCATTAGAGTTTGCAGCTATGCTATTCGAGAAAGCGAATCAGATGGGGTTGATGGAAAAAGGGTCAGTGTGGATCATCACAGATGACATAGCAAGCCATCTTGATTCAATGGAATATTCCTCTGTTACCTTCAATATGCAGGGTGTTCTTGGATGCAAAACAAGCTTCGCCGAGACAAGCCAAGCATTCAAACGGTTCAAATCCGAGTTCCAGCGCGAGTTTGAGTTGGAATATCCTGAGGGAGGAGGAATAGAAAACCCCTATCCGAGTCTCTTAGCTCTTAAGGCTTATGATTCTATTTGGATCATTGCTCATGCTCTAAGAAAATTAGAGTCACAAGGAAACTTTCCCATGGACGAGTTATCAAAGAATGTTGTAGCCACAAACCATGAGGGTCTAAGTGGTAAAATAAGCTTCAAAGATGGAAGATTGTTGGAACCACCAACATTTAAGATTGTCAATGTTATTGGAAGAACCTACAATGAGTTAGCATATTGGTCGCCGGAATCCGGTTTCTCGGAGAAACTTGCCACCCAAGTTAGTAGTCCACCCAAGTTGTGA 657 0.417 MNTLLAPKTAIEHELKKLKNKSYNRVFLILQSSLEFAAMLFEKANQMGLMEKGSVWIITDDIASHLDSMEYSSVTFNMQGVLGCKTSFAETSQAFKRFKSEFQREFELEYPEGGGIENPYPSLLALKAYDSIWIIAHALRKLESQGNFPMDELSKNVVATNHEGLSGKISFKDGRLLEPPTFKIVNVIGRTYNELAYWSPESGFSEKLATQVSSPPKL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121566g00003 218 Pfam Receptor family ligand binding region 15 188 IPR001828 -
Stsc121566g00003 218 Gene3D - 11 204 - -
Stsc121566g00003 218 Gene3D - 83 179 - -
Stsc121566g00003 218 SUPERFAMILY Periplasmic binding protein-like I 9 203 IPR028082 -
Stsc121566g00003 218 PANTHER OS06G0188250 PROTEIN 6 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121566g00003 Stsc-Chr121566 9307 9963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121566g00003 1 203 Ion Channels AT2G29120 30.568 2.04e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121566g00003 - - gmx:100781045 253.832