Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121565g00006 ATGGCCATGGATCCCACCAAGAAACGCAAGCTAGACGAGAACGGTTTCTCTGCCGCCCCGGCCGCCGCTACCGATGGGGACAATCACCTCATGCTCACCCCTGCCGACGCCCGCAAGATCATGGAGCGCTTCACCCCTGACCAGCTACTTGATATCCTCCAGGACGCCGCCGTCCGCCACGCGGACGTCCTCGCCGCTGTGCGCTCCGTCGCCGATCCCGACGTCTCTCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGTCTCCGCAACCTATTCTCCACTTACGGCGACCTCGAGGAGGCCGTCGTGATCCTCGACAAAGCCACTGGCAAATCCAAGGGCTATGGCTTCGTCACCTTCCGACACGTCGATGGCGCACTACTCGCTCTGCGGGAGCCAAGCAAGCGAATTGATGGCCGTGTGACCGTCACCCAGCTTGCCGCAGCAGGCAATTCAGGCGCCGCCACTAACGCTGCTGACGTGGCACTGCGAAAGATCTACGTGGCAAACGTGCCGCCGGACCTCCCCGCGGACAAACTGCTGGCGCACTTCTCGCACTACGGGGAGATCGAGGAAGGGCCGCTAGGGTTCGACAAGCAGACCGGAAAATCCAAGGGTTTTGCGCTTTTCGTTTATAAGACTCCTGAGGGGGCTCAAGCTGCTTTGATGGAGCCCGTGAAGACGGTAGAAGGGAGGCAGTTAAATTGCAAGCTGGCAATTACCGATGGGAAGCAAGGGAAGCGTGGCAGTGCAGCCCCAGTGGGGCCTGATGGTGTTCAGGGTCACAGTCATGGTCATGGTCACGGGAATGCTCACGCTCACGGTGATGGGATGGGGATGGCTCCGGCTTCTGTTCCAGGAACGCTCTCTGGCCAATATGGCGGCCCTGTTGGCGGTTTGGGTTCTTATGGAGGGTTTGGAGGTGGGCTTCAGGGTCAGCCTCCGATGGGGAGTCATCCGCTGAATTCTTCAGTTGGTGGGCTAGGTTCCGTTGGAAATCAGGCTCCCCCAGCAATGGGCGGGGCTGGAGGGTATGGGTCTGGTCTTGGAGGGCATTATGGTGGCTATGGTGGGCCTGGATCTGCAGGCTTCGGTGGAATGGGAGGTGGGGCCGCAGGTGGTGGTGCTGGTTTAGGAGGCGGCACAGGTGGTGCCGGTGCTGGTGGACTTGGTGGTGGTTTGGGTGGTGCTGCTTCCATGTATAGATTGCCAGGTTCAGCTGGAATGCCAGGTGCTGGGTATCCTGACAGTGGACATTACAGTTTGTCAGCTTCGTCTGGTTACCAGAATCAGCATCACCCGCCTGCTGGAGCCTCTCCTGTTCCTAGGGTTCCTCCTGGTTCTATGTATCCAAATGTGCCTCCTTACTACTGA 1392 0.597 MAMDPTKKRKLDENGFSAAPAAATDGDNHLMLTPADARKIMERFTPDQLLDILQDAAVRHADVLAAVRSVADPDVSQRKLFIRGLGWDTTTDGLRNLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGAATNAADVALRKIYVANVPPDLPADKLLAHFSHYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALMEPVKTVEGRQLNCKLAITDGKQGKRGSAAPVGPDGVQGHSHGHGHGNAHAHGDGMGMAPASVPGTLSGQYGGPVGGLGSYGGFGGGLQGQPPMGSHPLNSSVGGLGSVGNQAPPAMGGAGGYGSGLGGHYGGYGGPGSAGFGGMGGGAAGGGAGLGGGTGGAGAGGLGGGLGGAASMYRLPGSAGMPGAGYPDSGHYSLSASSGYQNQHHPPAGASPVPRVPPGSMYPNVPPYY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121565g00006 463 Gene3D - 54 161 IPR012677 -
Stsc121565g00006 463 MobiDBLite consensus disorder prediction 426 463 - -
Stsc121565g00006 463 Gene3D - 162 286 IPR012677 -
Stsc121565g00006 463 MobiDBLite consensus disorder prediction 312 338 - -
Stsc121565g00006 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Stsc121565g00006 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 239 IPR000504 GO:0003723
Stsc121565g00006 463 MobiDBLite consensus disorder prediction 444 463 - -
Stsc121565g00006 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 247 IPR000504 GO:0003723
Stsc121565g00006 463 PANTHER GEO13361P1-RELATED 61 364 - -
Stsc121565g00006 463 MobiDBLite consensus disorder prediction 246 293 - -
Stsc121565g00006 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Stsc121565g00006 463 SUPERFAMILY RNA-binding domain, RBD 163 275 IPR035979 GO:0003676
Stsc121565g00006 463 MobiDBLite consensus disorder prediction 322 336 - -
Stsc121565g00006 463 MobiDBLite consensus disorder prediction 1 23 - -
Stsc121565g00006 463 FunFam UBP1-associated protein 2C isoform A 61 164 - -
Stsc121565g00006 463 SMART rrm1_1 79 151 IPR000504 GO:0003723
Stsc121565g00006 463 SMART rrm1_1 171 243 IPR000504 GO:0003723
Stsc121565g00006 463 SUPERFAMILY RNA-binding domain, RBD 70 153 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121565g00006 Stsc-Chr121565 17675 19066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121565g00006 166 316 C2H2 Transcription Factor Family AT2G19380 32.597 1.85e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121565g00006 K12741 - qsa:O6P43_001025 534.258