Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121563g00004 ATGGCTAAAGGGAAAGAGATTGTTTTGTTTTTGGATTATGATGGAACTCTATCACCAATTGTGGATGATCCTGATAAAGCTCATATAACTGATGCTATGCGATCCGCTATACGTGAAGTTGCTTCTTGTTTCTCAACCGCCATTATCAGTGGAAGGCAGAGGAATAAGGGTAATCAATTTGTTAACTTCCTTCCAGCAAAAGAATATTTGTCAACAATCCAAGAGAAGATAATTGAGGTTCTAAGGGAAAATATTGCAACAATAAAGGGCTCTACCATTGAAGATAATTTGTACTGTATTAGTGTACACTACCGACGTGTCAAGAGTGAAGAGGATGTTGGTGTCCTGAAAGAGATTGTGGAGACCATTATGAAAGCTTACCCAGATTTTCAAATCTCAGGAGGAAGAAAGGTTATGGAGATACGGCCAAAGATAAATTGGGATAAAGGTCGTGCACTATTGTATTTATTGGAGACTCTTGGCTTTGACAACTTTAATGATGTTCTACCAATTTACATAGGGGATGACAAAACAGATGAAGATGCTTTTAAGGTTATAGTTCACATAGGGCATGGTTTTCCAATAATAGTTTCTTCTGTTGCTAAAGAGACAATGGCTTCATTTTCTCTGCGTGACCCTTCTCATGTTATGGCTTTCTTGATACGTTTAGCAAAATGGAAAAGGAAATTAACAACTCATTCATCACCAAAACCAAACAAAGTTGTTGATGATGATCAGAAGAAGGAAAATTATTAA 756 0.3677 MAKGKEIVLFLDYDGTLSPIVDDPDKAHITDAMRSAIREVASCFSTAIISGRQRNKGNQFVNFLPAKEYLSTIQEKIIEVLRENIATIKGSTIEDNLYCISVHYRRVKSEEDVGVLKEIVETIMKAYPDFQISGGRKVMEIRPKINWDKGRALLYLLETLGFDNFNDVLPIYIGDDKTDEDAFKVIVHIGHGFPIIVSSVAKETMASFSLRDPSHVMAFLIRLAKWKRKLTTHSSPKPNKVVDDDQKKENY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121563g00004 251 MobiDBLite consensus disorder prediction 232 251 - -
Stsc121563g00004 251 NCBIfam trehalose-phosphatase 66 224 IPR003337 GO:0003824|GO:0005992
Stsc121563g00004 251 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 62 IPR044651 GO:0004805|GO:0005992
Stsc121563g00004 251 Gene3D - 95 237 IPR023214 -
Stsc121563g00004 251 Gene3D - 7 94 IPR023214 -
Stsc121563g00004 251 Pfam Trehalose-phosphatase 10 62 IPR003337 GO:0003824|GO:0005992
Stsc121563g00004 251 Pfam Trehalose-phosphatase 72 214 IPR003337 GO:0003824|GO:0005992
Stsc121563g00004 251 SUPERFAMILY HAD-like 8 228 IPR036412 -
Stsc121563g00004 251 FunFam Trehalose 6-phosphate phosphatase 73 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121563g00004 Stsc-Chr121563 26334 28869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121563g00004 8 238 Trehalose Biosynthesis Gene Families AT1G60140 26.616 1.52e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121563g00004 K01087 - gmx:100799466 315.079