Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121563g00003 ATGCCAACAACTAAGCTCTTCTTCTCCCAACTCCGTCTCCTCCATCTCCCTTCTCCTTCTTCACTCACAATGAAGCCACCATCCTCATTACTCCTCTCTCGTCCTTCTAGAACCTTCCTCCCCACCTTCCCCTTCAAATTCAAGCACCTCGCCCTTCGAAACGCACCGTTTCGCGCCCTTTCCACTCGCTCCGACTCAACCCGCCGCAAACAAAGGCCTCGCCTTTCTTCTTCTTCTTCTCCCTCCGCAAACCCTAAGAGCTTAATCGACGACGAAGCTGAGCTCAGTGACTGGGTCGACAAGATTCGAACCAAGCGAGTTGACTCGGAATTCGGTGAGTCAACTCGGAATCCCGGGCAAGTTCGCCGCGAGCCTTCTTCCAACTCGTCGTTCTCGCGGAGTTCGGGGTTTTCGCAGCGAAGATTTGGTCGTGAATTGGAGGAGGAAGACAATGGGGGATTCAGGACAAGGAAGAGAAGGGGTGTGGAGTTGAATAGAGGAGGTGGAGGGAAGAGTTTGAGGAGAAAACCTAAGCCCCAATTGATGAGCGAAAATGATGAAGATGATGATGAAGTGGTTGTGAGGAAGGGATTCAAGGGTTTTCTTAGTGAGGAAGATGATGAAGAAGAAGAAAGTGATGAGAGTGAAGATGATGAAATTGTGAGAAAGGGATTCAAGGGTTTTCTTAGTGAGGAAGATGATGAAGAAGAAGAAAGTGATGAGAGTGAAGATGATGAAATTGTGAGAAAAAGTAGAAGTGCTTTGTTTGGTGGCACTAAACAAGAACAACAACCAGCACCAGCAGCTCGAAGAGCTTCTTCACCTTCTGGAACTGATTCGTATTTGAGTGACACAAGGTTCGACCAATGTTCAGTCTCCCCACTATCATTGAAAGGAGTCAAGGATGCTGGATACGAGAAGATGACTATTGTACAGGCGGCAACTCTTCCTGTAATACTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGAACAGGCACTGGAAAAACGGTAGCCTTTTTGCTCCCATCAATTGAAGTTGTTGCAAATTCACCACCAACTGATCGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTGCAGAAGCTGGTAAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGTGGGACGAGACTTGCCTTAGAGCAGAAGCGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTGGAGAATACTGCTGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTGTTGGTGCTCGATGAAGCTGATCATTTACTTGACATGGGATTTCGGAAAGACATTGAGAAGATAATTGCTGCAGTACCTAAACAACGACAAACACTTATGTTTTCTGCCACAATTCCGGATGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAGTTTATCAATACGGTTCAAGAGGGAACTGAGGAGACGCATTCACAGGTTCGCCAAACACATTTAGTTGCCCCATTAGACAAGCATTTTTCTTTACTCTATGCTCTTCTAAAGGAGCACATTGCCGACGACGTTGACTATAAGGTTCTTGTATTCTGCACAACAGCCATGGTCACAAGACTTGTAGCCGAACTTCTTGGTGAGTTGAACCTCAATGTTAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACTAGAGTCTCCGAAGAATTTCGCAAGTCAAAGGGACTTATCCTAGTTACATCTGATGTATCTGCGCGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCAGCTGACAGAGAACAGTATATACATAGACTCGGTAGAACAGGACGTCGAGGGAAAGAAGGGCAGGGCATATTGCTTCTGGCTCCATGGGAAGAGTTCTTCTTATCTACCATAAAAGATTTGCCTATTGAGAAAGCTAACATACCTTCTGTTGATCCTGACACAAAGAAAAAGGTGGAAAAGGCTCTATGCCATGTTGAGATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCCAACAAGAAGGTTGGGCGCGACAAGTACCGGCTCGTAGAGCTTGCAAATGAGTTCAGCAAATGCATGATGCTTGATAACCCTCCTGCCATCCCTAAGCTTGTTCTTGGCAAGATGGGACTTAGAAATATCCCTGGTTTGCGTTCCAAATAG 2262 0.4593 MPTTKLFFSQLRLLHLPSPSSLTMKPPSSLLLSRPSRTFLPTFPFKFKHLALRNAPFRALSTRSDSTRRKQRPRLSSSSSPSANPKSLIDDEAELSDWVDKIRTKRVDSEFGESTRNPGQVRREPSSNSSFSRSSGFSQRRFGRELEEEDNGGFRTRKRRGVELNRGGGGKSLRRKPKPQLMSENDEDDDEVVVRKGFKGFLSEEDDEEEESDESEDDEIVRKGFKGFLSEEDDEEEESDESEDDEIVRKSRSALFGGTKQEQQPAPAARRASSPSGTDSYLSDTRFDQCSVSPLSLKGVKDAGYEKMTIVQAATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVANSPPTDRDHRRPPIHVLVICPTRELASQAAAEAGKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQTHLVAPLDKHFSLLYALLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTIKDLPIEKANIPSVDPDTKKKVEKALCHVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSKCMMLDNPPAIPKLVLGKMGLRNIPGLRSK 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121563g00003 753 CDD SF2_C_DEAD 514 647 - -
Stsc121563g00003 753 MobiDBLite consensus disorder prediction 109 285 - -
Stsc121563g00003 753 Pfam DEAD/DEAH box helicase 311 487 IPR011545 GO:0003676|GO:0005524
Stsc121563g00003 753 MobiDBLite consensus disorder prediction 140 165 - -
Stsc121563g00003 753 CDD DEADc_MSS116 292 501 - -
Stsc121563g00003 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 499 IPR014001 -
Stsc121563g00003 753 SMART helicmild6 557 638 IPR001650 -
Stsc121563g00003 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 533 683 IPR001650 -
Stsc121563g00003 753 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 285 313 IPR014014 GO:0003724
Stsc121563g00003 753 Gene3D - 230 500 IPR027417 -
Stsc121563g00003 753 MobiDBLite consensus disorder prediction 113 139 - -
Stsc121563g00003 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 655 IPR027417 -
Stsc121563g00003 753 MobiDBLite consensus disorder prediction 177 203 - -
Stsc121563g00003 753 Gene3D - 508 731 IPR027417 -
Stsc121563g00003 753 MobiDBLite consensus disorder prediction 256 285 - -
Stsc121563g00003 753 SMART ultradead3 304 517 IPR014001 -
Stsc121563g00003 753 MobiDBLite consensus disorder prediction 61 90 - -
Stsc121563g00003 753 Pfam Helicase conserved C-terminal domain 529 638 IPR001650 -
Stsc121563g00003 753 PANTHER RNA HELICASE 215 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121563g00003 Stsc-Chr121563 18598 23120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121563g00003 278 668 Eukaryotic Initiation Factors Gene Family AT3G19760 29.167 9.27e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121563g00003 - - adu:107463398 1251.5