Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc121563g00003 | ATGCCAACAACTAAGCTCTTCTTCTCCCAACTCCGTCTCCTCCATCTCCCTTCTCCTTCTTCACTCACAATGAAGCCACCATCCTCATTACTCCTCTCTCGTCCTTCTAGAACCTTCCTCCCCACCTTCCCCTTCAAATTCAAGCACCTCGCCCTTCGAAACGCACCGTTTCGCGCCCTTTCCACTCGCTCCGACTCAACCCGCCGCAAACAAAGGCCTCGCCTTTCTTCTTCTTCTTCTCCCTCCGCAAACCCTAAGAGCTTAATCGACGACGAAGCTGAGCTCAGTGACTGGGTCGACAAGATTCGAACCAAGCGAGTTGACTCGGAATTCGGTGAGTCAACTCGGAATCCCGGGCAAGTTCGCCGCGAGCCTTCTTCCAACTCGTCGTTCTCGCGGAGTTCGGGGTTTTCGCAGCGAAGATTTGGTCGTGAATTGGAGGAGGAAGACAATGGGGGATTCAGGACAAGGAAGAGAAGGGGTGTGGAGTTGAATAGAGGAGGTGGAGGGAAGAGTTTGAGGAGAAAACCTAAGCCCCAATTGATGAGCGAAAATGATGAAGATGATGATGAAGTGGTTGTGAGGAAGGGATTCAAGGGTTTTCTTAGTGAGGAAGATGATGAAGAAGAAGAAAGTGATGAGAGTGAAGATGATGAAATTGTGAGAAAGGGATTCAAGGGTTTTCTTAGTGAGGAAGATGATGAAGAAGAAGAAAGTGATGAGAGTGAAGATGATGAAATTGTGAGAAAAAGTAGAAGTGCTTTGTTTGGTGGCACTAAACAAGAACAACAACCAGCACCAGCAGCTCGAAGAGCTTCTTCACCTTCTGGAACTGATTCGTATTTGAGTGACACAAGGTTCGACCAATGTTCAGTCTCCCCACTATCATTGAAAGGAGTCAAGGATGCTGGATACGAGAAGATGACTATTGTACAGGCGGCAACTCTTCCTGTAATACTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGAACAGGCACTGGAAAAACGGTAGCCTTTTTGCTCCCATCAATTGAAGTTGTTGCAAATTCACCACCAACTGATCGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTGCAGAAGCTGGTAAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGTGGGACGAGACTTGCCTTAGAGCAGAAGCGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTGGAGAATACTGCTGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTGTTGGTGCTCGATGAAGCTGATCATTTACTTGACATGGGATTTCGGAAAGACATTGAGAAGATAATTGCTGCAGTACCTAAACAACGACAAACACTTATGTTTTCTGCCACAATTCCGGATGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAGTTTATCAATACGGTTCAAGAGGGAACTGAGGAGACGCATTCACAGGTTCGCCAAACACATTTAGTTGCCCCATTAGACAAGCATTTTTCTTTACTCTATGCTCTTCTAAAGGAGCACATTGCCGACGACGTTGACTATAAGGTTCTTGTATTCTGCACAACAGCCATGGTCACAAGACTTGTAGCCGAACTTCTTGGTGAGTTGAACCTCAATGTTAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACTAGAGTCTCCGAAGAATTTCGCAAGTCAAAGGGACTTATCCTAGTTACATCTGATGTATCTGCGCGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCAGCTGACAGAGAACAGTATATACATAGACTCGGTAGAACAGGACGTCGAGGGAAAGAAGGGCAGGGCATATTGCTTCTGGCTCCATGGGAAGAGTTCTTCTTATCTACCATAAAAGATTTGCCTATTGAGAAAGCTAACATACCTTCTGTTGATCCTGACACAAAGAAAAAGGTGGAAAAGGCTCTATGCCATGTTGAGATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCCAACAAGAAGGTTGGGCGCGACAAGTACCGGCTCGTAGAGCTTGCAAATGAGTTCAGCAAATGCATGATGCTTGATAACCCTCCTGCCATCCCTAAGCTTGTTCTTGGCAAGATGGGACTTAGAAATATCCCTGGTTTGCGTTCCAAATAG | 2262 | 0.4593 | MPTTKLFFSQLRLLHLPSPSSLTMKPPSSLLLSRPSRTFLPTFPFKFKHLALRNAPFRALSTRSDSTRRKQRPRLSSSSSPSANPKSLIDDEAELSDWVDKIRTKRVDSEFGESTRNPGQVRREPSSNSSFSRSSGFSQRRFGRELEEEDNGGFRTRKRRGVELNRGGGGKSLRRKPKPQLMSENDEDDDEVVVRKGFKGFLSEEDDEEEESDESEDDEIVRKGFKGFLSEEDDEEEESDESEDDEIVRKSRSALFGGTKQEQQPAPAARRASSPSGTDSYLSDTRFDQCSVSPLSLKGVKDAGYEKMTIVQAATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVANSPPTDRDHRRPPIHVLVICPTRELASQAAAEAGKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQTHLVAPLDKHFSLLYALLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTIKDLPIEKANIPSVDPDTKKKVEKALCHVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSKCMMLDNPPAIPKLVLGKMGLRNIPGLRSK | 753 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc121563g00003 | 753 | CDD | SF2_C_DEAD | 514 | 647 | - | - | |
Stsc121563g00003 | 753 | MobiDBLite | consensus disorder prediction | 109 | 285 | - | - | |
Stsc121563g00003 | 753 | Pfam | DEAD/DEAH box helicase | 311 | 487 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc121563g00003 | 753 | MobiDBLite | consensus disorder prediction | 140 | 165 | - | - | |
Stsc121563g00003 | 753 | CDD | DEADc_MSS116 | 292 | 501 | - | - | |
Stsc121563g00003 | 753 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 316 | 499 | IPR014001 | - | |
Stsc121563g00003 | 753 | SMART | helicmild6 | 557 | 638 | IPR001650 | - | |
Stsc121563g00003 | 753 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 533 | 683 | IPR001650 | - | |
Stsc121563g00003 | 753 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 285 | 313 | IPR014014 | GO:0003724 | |
Stsc121563g00003 | 753 | Gene3D | - | 230 | 500 | IPR027417 | - | |
Stsc121563g00003 | 753 | MobiDBLite | consensus disorder prediction | 113 | 139 | - | - | |
Stsc121563g00003 | 753 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 362 | 655 | IPR027417 | - | |
Stsc121563g00003 | 753 | MobiDBLite | consensus disorder prediction | 177 | 203 | - | - | |
Stsc121563g00003 | 753 | Gene3D | - | 508 | 731 | IPR027417 | - | |
Stsc121563g00003 | 753 | MobiDBLite | consensus disorder prediction | 256 | 285 | - | - | |
Stsc121563g00003 | 753 | SMART | ultradead3 | 304 | 517 | IPR014001 | - | |
Stsc121563g00003 | 753 | MobiDBLite | consensus disorder prediction | 61 | 90 | - | - | |
Stsc121563g00003 | 753 | Pfam | Helicase conserved C-terminal domain | 529 | 638 | IPR001650 | - | |
Stsc121563g00003 | 753 | PANTHER | RNA HELICASE | 215 | 680 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc121563g00003 | Stsc-Chr121563 | 18598 | 23120 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc121563g00003 | 278 | 668 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.167 | 9.27e-47 | 170 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc121563g00003 | - | - | adu:107463398 | 1251.5 |