Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121558g00004 ATGGAGAGAAACAGTGTGAGATGGGCGGAGGGTTTTGAGAGAGGGAAACACCGTGAGGGTTCCGACTTCGCCGGAGGAAGGAAAAAGGGGGAGAGTGTGGGTGGTAGCGCATCAGGCGTTTGGAGGGATATCGATAATAGGGGTAGGATAGATAAACATAGGTGGTCTGAATCAAATCGCAAAAGTGAGGACTGTCATACAATCTTTGTAGACAACCTACCTATGAATATAAGTAAGAGAGATTTATACAGAGAATTTGGGAGACAAGGGTTTATAACTGATGTGTTCATCTCCAGGAAAGTGAGGAGGAATGCAAACGGTCCCTTTGCCTTCGTGAGATTCAAGGCTCTTGGAGGAGCAATGAGGGCTATTGAAATGTTGAATGGCACTTCTTGGAGTGGTAAAAAGCTGTATATTACCATGTCCAAATTCAGAAGAGAAAGAGAGACAAATAGGAGGACACAAGGGTGGGTGAGTCAGGGAATTCAAGGACAGAGGACTGTGAAGAAATGGGTTCCAGTAAATACTATGGGAATAGAAGAAAACAATAAGGGGTTGAAGCAATCCAAAACTAAATCTCCTATTGAGAATCATGTAAAGGAAGTGGAAGCTAAATGGTCTGAAAAACAAAGGCAGAGATTGCAGAGAAGCTTGCTGGGAGTATGTGTGAAACCTATTGATTTTAGGAAGGTGATGTATAGATTGTTAGATGACTGGAAAGGTCCGGGGGAGATTGAATGCAGGGATGTCGGCCCGTACAGATGCCTGATCACCTTTGAATCTCCTGAGGCTAGAGATGCGGCAATGGGTGATGAGTTGATTCTATCATTATTAGATGAAGTTATACCACATTGGGAGTACTTCTGGAGCCTCTCAAGAAGGATTTGGATTGAAGTGATGGGATTACCAATAGGACTGTGGTGTAATGAGAACTACAATAAAATTGCAAAATTGTGGGGGAAGATGGTTAAGCTGGATGATAGAATAGAGGAGTCAAAATCTTATAGCACAGCCAGAATTCTTCTTGATTGTTTCCAATGGGAAAGAATTCATGAGTGGGTTTCAATTAAAATTGAAGATAGAAAGTTTGAGGTGTTTGTGAAAGAATTTGGGTCGGAAGTATACAGTGTACAGTCTCACCCTGATCTGGGAACTGAATGCTCTATTTCGATGGAAGAGGAGAAGTCGACGTCCATGGTTGAGGAATCTCCGGTGTAA 1218 0.4261 MERNSVRWAEGFERGKHREGSDFAGGRKKGESVGGSASGVWRDIDNRGRIDKHRWSESNRKSEDCHTIFVDNLPMNISKRDLYREFGRQGFITDVFISRKVRRNANGPFAFVRFKALGGAMRAIEMLNGTSWSGKKLYITMSKFRRERETNRRTQGWVSQGIQGQRTVKKWVPVNTMGIEENNKGLKQSKTKSPIENHVKEVEAKWSEKQRQRLQRSLLGVCVKPIDFRKVMYRLLDDWKGPGEIECRDVGPYRCLITFESPEARDAAMGDELILSLLDEVIPHWEYFWSLSRRIWIEVMGLPIGLWCNENYNKIAKLWGKMVKLDDRIEESKSYSTARILLDCFQWERIHEWVSIKIEDRKFEVFVKEFGSEVYSVQSHPDLGTECSISMEEEKSTSMVEESPV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121558g00004 405 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 67 200 - -
Stsc121558g00004 405 Pfam Domain of unknown function (DUF4283) 208 341 IPR025558 -
Stsc121558g00004 405 SUPERFAMILY RNA-binding domain, RBD 60 162 IPR035979 GO:0003676
Stsc121558g00004 405 MobiDBLite consensus disorder prediction 1 26 - -
Stsc121558g00004 405 Gene3D - 42 170 IPR012677 -
Stsc121558g00004 405 MobiDBLite consensus disorder prediction 1 38 - -
Stsc121558g00004 405 SMART rrm1_1 67 140 IPR000504 GO:0003723
Stsc121558g00004 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 137 IPR000504 GO:0003723
Stsc121558g00004 405 CDD RRM_SF 68 139 - -
Stsc121558g00004 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121558g00004 Stsc-Chr121558 12442 13659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121558g00004 52 153 Eukaryotic Initiation Factors Gene Family AT1G22760 29.412 3.70e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121558g00004 - K12891 ahf:112794598 188.734