Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121555g00002 ATGATCGGCAGCGGAGACCGGCGGCGCAACTCCGTGGGGGAGCTGCGGCATGAGATAGTTGGGAAAATAACAGAGGTTGGTAACAAGGTAGCAAAGTTCAAGATTGGGGACAAAGTAGGCGTTGGAATCATCCTTGACTCATGCCGTTCATGCCAAAACTGTGCTAACAATCTTGAGAATTATTGTCCAAAGAAGATTCCCACCTATGGCTTCAAGAACACCGATGGCACCGTGACATATGGAGGCTTTTCGGATTCAATGGTGGCGCACGAGGACTTCGTGGTTCGAATCCCGGACGGGCTACCTCTTGATGCAGCTGCTCCTTTGCTCTGTGCTGGGATTACAGTTTATAGCCCGCTCCGGTATTTCGGACTCGATAAACTCGGTTTACATGTTGGTGTGGTTGGTCTTGGCGGAGTAGGCCACCTGGCTGTTAAGTTTGCCAAAGCTTTTGGTGCTAAGGTCACTGTTGTTAGTACATCGCCTAGTAAAAAGAAGGAGGCCTTGGAAAATTTGGGTGCTGATTCATTTGTCATAAGCACGGACCAAGATCAGATGCAGGGTGTTATTGGTACAATGGATGGTATTATTGATACGGTTTCAGCAGTTCATCCTCTGTTGCCTTTGCTTACTTTGTTGAAGTCTCATGGGAAGCTTGTATTGGTTGGTGTAGTACCCAAGCTAGAACTGCCAGTCTTTCCTTTAATCATGGAAAGAAGATTAATAGCTGGGAGTAGCGTTGGAGGGTTAAAGGAAACTCAAGAAATGCTTGAGTTTGCAGCTGAGCATAATGTGAAAGCAGACATTGAGGTCATTCCTATGGACTATGTCAACACAGCAATGGAGCGTCTTCTCAAAGCAGATGTTAAGTATAGATTTGTCATTGATATAGCAAACACACTCGGCTCTACCTCTTAA 918 0.4608 MIGSGDRRRNSVGELRHEIVGKITEVGNKVAKFKIGDKVGVGIILDSCRSCQNCANNLENYCPKKIPTYGFKNTDGTVTYGGFSDSMVAHEDFVVRIPDGLPLDAAAPLLCAGITVYSPLRYFGLDKLGLHVGVVGLGGVGHLAVKFAKAFGAKVTVVSTSPSKKKEALENLGADSFVISTDQDQMQGVIGTMDGIIDTVSAVHPLLPLLTLLKSHGKLVLVGVVPKLELPVFPLIMERRLIAGSSVGGLKETQEMLEFAAEHNVKADIEVIPMDYVNTAMERLLKADVKYRFVIDIANTLGSTS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121555g00002 305 SUPERFAMILY GroES-like 16 144 IPR011032 -
Stsc121555g00002 305 PANTHER ALDEHYDE REDUCTASE 16 300 IPR047109 GO:0016616
Stsc121555g00002 305 Gene3D - 112 267 - -
Stsc121555g00002 305 FunFam Cinnamyl alcohol dehydrogenase 112 267 - -
Stsc121555g00002 305 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 266 IPR036291 -
Stsc121555g00002 305 Pfam Zinc-binding dehydrogenase 139 261 IPR013149 -
Stsc121555g00002 305 FunFam Putative cinnamyl alcohol dehydrogenase 6 268 297 - -
Stsc121555g00002 305 CDD CAD1 17 296 IPR047109 GO:0016616
Stsc121555g00002 305 Gene3D - 16 297 - -
Stsc121555g00002 305 Pfam Alcohol dehydrogenase GroES-like domain 17 96 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121555g00002 Stsc-Chr121555 6841 8431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121555g00002 17 301 Monolignol Biosynthesis Gene Families AT4G37990 67.483 1.31e-125 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121555g00002 K23232 - gmx:100816901 395.586