Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121555g00001 ATGGCAGCAGCAGCACAAGTAGCACCAGAATTGGAGCATCCTAAGAAGGCTTTTGGTTGGGCGGCCAGGGATCCCTCTGGTCATCTATCTCCTTTCAATTTCTCTAGAAGGGAAACTGGTGAAAAGGATGTGACATTCAAAGTGTTGTATTGTGGGATTTGTCACTCGGATCTCCACATGGTGAAGAACGAATGGGGCTTTTCCATCTATCCATTGGTCCCTGGGCATGAAGTTGTTGGTGTAGTGACAGAAGTGGGAAGCAAGGTTCAAAAGTACAAGATTGGGGACAGAGTAGGTGTGGGATGCTTGGTTGAATCCTGCAGAAACTGTCAAAACTGCAACGATAATCTTGAGAATTATTGCTCCTCATATACTCTAACATACGGTGCAAAATCCAGTGATGGAAGCATCACATATGGAGGCTATTCTGATTCAATGGTTGTTGATGAACACTTTGTTGTTCGAATCCCTGATGAGTTGCCTCTTGATGCTGCTGCTCCTCTGCTATGTGCTGGGATCACAGTGTATAGCCCTCTCAGATATTTTGGACTAGACAAACCTGGCTTGCATGTTGGTGTAGTTGGTCTTGGTGGGTTAGGACACGTGGCAGTCAAATTTGCCAAAGCTTTTGGTGCTAAAGTCACTGTTATCAGTACCTCGCCCCACAAAAAGGAGGAAGCAATTCAACATTTGGGAGCTGATTCATTTTTGTTAAGTCGCGACCAAGATCAGATGCAGGGTGCAAAGGGAAGTTTGGATGGTATCATAGACACAATTTCTGCTGTTCATTCTCTGGTGCCTCTCATTGGTTTATTGAAGTCTCATGGAAAACTTGTAATGGTTGGAGCACCTGAGAAGCCTCTAGAACTGCCAATCCTTCCTTTACTCATGGGGAGAAAGCTAGTAGCTGGTAGTGGCACTGGAGGGTTAAAAGAGACTCAGGAGATGATTGATTTTGCTGCAAAACACAATGTGAGACCTGATATCGAAGTTATTCCTATTGATTATGTCAACACAGCAATGGAGCGCCTCCTAAAATCAGAAGTCAAGTATCGCTTTGTCATTGACATTGGAAAGACTCTCAAACAAACCTGTTGA 1098 0.4426 MAAAAQVAPELEHPKKAFGWAARDPSGHLSPFNFSRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSIYPLVPGHEVVGVVTEVGSKVQKYKIGDRVGVGCLVESCRNCQNCNDNLENYCSSYTLTYGAKSSDGSITYGGYSDSMVVDEHFVVRIPDELPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHVAVKFAKAFGAKVTVISTSPHKKEEAIQHLGADSFLLSRDQDQMQGAKGSLDGIIDTISAVHSLVPLIGLLKSHGKLVMVGAPEKPLELPILPLLMGRKLVAGSGTGGLKETQEMIDFAAKHNVRPDIEVIPIDYVNTAMERLLKSEVKYRFVIDIGKTLKQTC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121555g00001 365 Gene3D - 20 357 - -
Stsc121555g00001 365 FunFam Uncharacterized protein 20 170 - -
Stsc121555g00001 365 Pfam Zinc-binding dehydrogenase 198 321 IPR013149 -
Stsc121555g00001 365 CDD CAD1 18 356 IPR047109 GO:0016616
Stsc121555g00001 365 FunFam Cinnamyl alcohol dehydrogenase 171 327 - -
Stsc121555g00001 365 FunFam Putative cinnamyl alcohol dehydrogenase 6 328 357 - -
Stsc121555g00001 365 SUPERFAMILY GroES-like 23 188 IPR011032 -
Stsc121555g00001 365 Pfam Alcohol dehydrogenase GroES-like domain 42 155 IPR013154 -
Stsc121555g00001 365 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 75 89 IPR002328 GO:0008270|GO:0016491
Stsc121555g00001 365 Gene3D - 171 327 - -
Stsc121555g00001 365 PANTHER ALDEHYDE REDUCTASE 9 360 IPR047109 GO:0016616
Stsc121555g00001 365 SMART PKS_ER_names_mod 27 355 IPR020843 GO:0016491
Stsc121555g00001 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 160 325 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121555g00001 Stsc-Chr121555 3325 6159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121555g00001 15 362 Monolignol Biosynthesis Gene Families AT4G37990 71.552 5.82e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121555g00001 K23232 - gmx:100816901 587.415