Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121554g00004 ATGGATGAAAAGCGCCGAACCGTGGCGTCCCTTGTATCGAAGCTAAGCTCCGTGTCCGAACGAACCCGAATCGACGCGCTCTGCGAGCTTCGGCAGATGTCGAAGCTCGACCCGGAAACCCGACCCATAATCGCCGAAGCTGGCGCCATCCCTTTCATCGCCGAAACACTCTACTCTTCCTCTCACCCGTCTCAAGAAAACGCCGCCGCCACGCTCTTAAACCTTTCCATCTCCGCAAAAGAACCGTTGGTTTCCACGCGCGGTGTTCTCGACGCCATAGCGCACGTGATCTCCCACCACTCCTCCTCCTCCTCCCCCTCCGCCGTCCAGTCCGCCGCAGCCACGATTCACAGCCTCCTCGCCGCCACCGACGACTACCGCCCCTCCGTCGGCGCCAAGCGCGACATAGTCTACGCGCTCGTTGACATCCTCCGGTGCCACGTGTCGTCCCCTCCGAGAACCATCAAGGACGCGCTGAAGGCGCTGTTCGGCATCGCGCTTTACCCTCCGAACCGCGCCACGATGGTGCATCTCGGCGTGATCCCCGCTCTTTTCGCCCTTGTGGTGAAGGACGGGCGCGTGGGGATCGTCGAGGACACCACCGCGGTGATCGCGCAGGTAGCCGGGTGCGAGGAGAGCGGCGAGGCCTTCCGGAAGGTCTCCGGGGTTGGGGTTCTTGCCGATCTCCTCGACCTATCAACCGGCGCCAGTATGCGAAGCAAGGAGAATGCCGTGTCGGCGTTGCTGAATTTGGTGCGGTGCGGTGGTGAGCGCGTTTTGGCGGAGGTCAGGGAGGCGGTTGCGGATGTTGCCGCCGATGGGATCGAGGATGTGGAGGAGAATGGAAGCACCAAGGGGAAGAGCAAAGCGAAGGAATTGTTGAAGGTTTTGTTTGGTGATGATGTTGATGATTTTCATGATGATAACAGTAGCAACAGCGTTTTGAGTTCGGGTAGAGGTTCGCAGTTTGATTCATTCTAG 981 0.5994 MDEKRRTVASLVSKLSSVSERTRIDALCELRQMSKLDPETRPIIAEAGAIPFIAETLYSSSHPSQENAAATLLNLSISAKEPLVSTRGVLDAIAHVISHHSSSSSPSAVQSAAATIHSLLAATDDYRPSVGAKRDIVYALVDILRCHVSSPPRTIKDALKALFGIALYPPNRATMVHLGVIPALFALVVKDGRVGIVEDTTAVIAQVAGCEESGEAFRKVSGVGVLADLLDLSTGASMRSKENAVSALLNLVRCGGERVLAEVREAVADVAADGIEDVEENGSTKGKSKAKELLKVLFGDDVDDFHDDNSSNSVLSSGRGSQFDSF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121554g00004 326 MobiDBLite consensus disorder prediction 301 326 - -
Stsc121554g00004 326 SMART arm_5 210 253 IPR000225 GO:0005515
Stsc121554g00004 326 SMART arm_5 37 77 IPR000225 GO:0005515
Stsc121554g00004 326 SMART arm_5 168 209 IPR000225 GO:0005515
Stsc121554g00004 326 PANTHER U BOX DOMAIN-CONTAINING 7 297 - -
Stsc121554g00004 326 MobiDBLite consensus disorder prediction 309 326 - -
Stsc121554g00004 326 FunFam ARM repeat superfamily protein 2 302 - -
Stsc121554g00004 326 Gene3D - 1 278 IPR011989 -
Stsc121554g00004 326 SUPERFAMILY ARM repeat 7 301 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121554g00004 Stsc-Chr121554 13559 15159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121554g00004 8 297 U-box Gene Family AT1G23030 31.615 1.39e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121554g00004 - - gmx:100787115 421.009