Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121545g00001 ATGGAGAGTAGCAGCCACCACTACAAGAAACAAAATTGGTATGAAAGGTCAAAGCCATTCATAGTTGTTACTTTTCTTCAGTTTGGATTTGCAGGCATGGATGTTCTATCTAAGGCTGCAATGAACAAAGGGATGAGCAACTACGTACTAGTCGTGTATCGCCACATCGTCGCGTTCATCGTCATAGCTCCTTTTGCGGTTTTTCTTGACAAGAAAGTGAGGCCTAGAATGACATTTTCAATCTTCATCAAGATAGTGGCACTCAGCATCCTAGAGCCAGTTTTTGATCAGAACTTGTATTTTCTGGGGATGAAGTATACAACAGCAACTTTTGCTGCTGCCATGGCCAATATGCTTCCTGCCATTACCTTCCTCATGGCTTGCATTCTCAGACTTGAGAAGATTAAAATAAAAACTATTCGTAGCATGGCAAAGGTGGTTGGAACTCTAGCAACACTTTCTGGGGCCATGGTAATGACACTGTTGAAAGGGCCAATTCTTGAGCTTTTTGGAAGACATGGAAGCCATAATCACAATCTGCAGCACAATGGTGATGAAATTACTCAACATGCAATAAAAGGCTTTGTCATGATCACAATTGGCTGTTTTAGTTGGGCCTGTTTTGTCATCCTCCAAACTATAACCCTTGAAGCCTACCCAGCTGAGCTCTCTCTTACTGCATGGATATGCATTTTGGGAGCAGCTGAAGGTGCTGCAGTGGCTATGATTATGGAAAGAGGCAACCCTTCGGTTTGGTATCTGAAATGGGATATGAAATTGCTTGCTGTTGTCTACAGTGGCATAGTGTGCTCAGGACTGGCTTATTACATGCAAGGATTGGTGTTGAAAACTAGAGGCCCAGTCTTTGTAACAGCATTTAATCCCCTCTGCATGGTAATTGTTGCTATTATGGGCTCCCTCATTCTAGCTGAGCAACTATTTCTTGGCAGGTTGATTGGTGCCATTATCATTGTTTTGGGGCTGTACCTTGTAGTGTGGGGTAAAAGCAAAGATTACACGCCACCAAGTAATGAACCTGTGTTGCCAGATAAACAAATTCCAGAGGAAGCCAACACCAAAAAGGAACATTGTGATCACAAGCTCACAGCCATCAGTAATTTAAGAGCTGGAATCACAACACTAGAAGAACAGGCATGA 1158 0.4283 MESSSHHYKKQNWYERSKPFIVVTFLQFGFAGMDVLSKAAMNKGMSNYVLVVYRHIVAFIVIAPFAVFLDKKVRPRMTFSIFIKIVALSILEPVFDQNLYFLGMKYTTATFAAAMANMLPAITFLMACILRLEKIKIKTIRSMAKVVGTLATLSGAMVMTLLKGPILELFGRHGSHNHNLQHNGDEITQHAIKGFVMITIGCFSWACFVILQTITLEAYPAELSLTAWICILGAAEGAAVAMIMERGNPSVWYLKWDMKLLAVVYSGIVCSGLAYYMQGLVLKTRGPVFVTAFNPLCMVIVAIMGSLILAEQLFLGRLIGAIIIVLGLYLVVWGKSKDYTPPSNEPVLPDKQIPEEANTKKEHCDHKLTAISNLRAGITTLEEQA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121545g00001 385 PANTHER WAT1-RELATED PROTEIN 18 339 IPR030184 GO:0016020|GO:0022857
Stsc121545g00001 385 Pfam EamA-like transporter family 28 143 IPR000620 GO:0016020
Stsc121545g00001 385 Pfam EamA-like transporter family 193 332 IPR000620 GO:0016020
Stsc121545g00001 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 336 - -
Stsc121545g00001 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121545g00001 Stsc-Chr121545 1659 7401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121545g00001 6 373 Nodulin-like Gene Family AT2G37460 61.081 2.22e-166 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121545g00001 - - pcin:129305629 544.273