Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121541g00005 ATGGAAGAGGTTACTTCGAATTCCATTGTCAACATTTTATACCTTTCGGCACGAATCCACTCCATGAAGTTCTATTCCCCTCTAGTGCATCCTTTATTTTTTATCATTGTTATTCTTTCTCCTCTAGTCTTTGCTGACTTAAGTTCCGATAAACAAGCCCTTCTTGATTTTGCTGCGGCTGTTCCCCACCGTCGTAACCTTAGGTGGAATTCATCTGCAGATGTTTGTACATCTTGGATAGGTGTCACTTGTAATTCGAATGGCACTCGTGTTGTTTCTCTCCGGCTCCCTGGAATTGGACTAGTTGGAACCATCCCAGCTGATACACTCGGCAAGCTTGATGCTCTTAGGAATCTAAGTCTCCGTTCAAACCTACTCGTTGGAAGCCTACCTGCCGATATTACTTCTCTTCCATTACTCCAAGACCTCTACCTTCAGCATAATAACCTTTCTGGTAATATACCTACCTCATTGCCACCCCAGCTCAATGTACTTGATTTGTCTTACAATTCTTTCACCGGCGGAATTCCAAAGGCATTACAGAATTTAACACAGCTAACAAGACTGAGCCTACAGAACAATTCCCTATCGGGAGAGATACCGAATCTCAATGTTGCTAAGCTCAGGCATTTGAATTTAAGCTACAACCACTTTAATGGCTCTATCCCTCCTGTTCTTAAGAACTTCCCGAATTCTTCCTTCGAAGGGAACTCTCACTTATGTGGATTACCTCTAAAGCCATGCTCTGTAGCTCCCCCTGAACCTTCTCCGTCAGCACCACCTACACCATCGCCTCATGTAAGAAAAAGCTCCAAACATAAGCTGAGTAAGGCAGCTATAATAGCAATCGCTGTTGGCGGAGGTGTGCTTCTGTTATTGTTAGTTCTTGTCATTGTCCTTTGCTGTTGTTTGAAGAAAAAGGATGATGGAAATGAAAGGCCTAGTAGTGTAAGTAAAGGGAAGGGTTCTAGTGTCGGTGGAAGGGGGGAGAAGCCGAAGGAAGAGTTTGGAAGTGGTGTACAAGAACCTGAGAAGAACAAACTGGTTTTCTTTGAGGGAAGTTCATATAACTTTGATCTCGAGGATTTGTTAAGGGCTTCGGCTGAAGTTTTGGGGAAGGGTAGTTATGGTACTGCATACAAGGCTGTGTTGGAGGAGTCGACAACGGTCGTAGTAAAACGGTTGAAAGAAGTTGTGGTGAGCAAAAAGGACTTTGAACAGCAGATGGAGATTATAGGAAGAGTCCGACAGCACCCGAATGTCTTGCCACTTCGCGCATATTATTATTCAAAGGACGAGAAGCTTTTGGTTTATGATTATGTCCCTGGTGGCAATTTATCAACACTCTTGCATGCTAATAGGGCAAGTGCAAGAACTCCATTAGATTGGGACTCAAGATTAAAACTCTCACTTGGAATTGCCAAAGGAATTGCTCACATACATTCCGTCGGCGGTCCGAAATTCACTCATGGAAATGTCAAAGCCTCGAATGTCCTCATCAGCCAAGAGAATGACGGGTACATTTCCGATTTCGGTCTGACCCCGCTCATGAATGTTCCCACAGCTCCTACTAGAGCTGCAGGTTACCGTGCGCCGGAAGTCATTGAAACCCGGAAACACACTCATAAATCCGACGTGTATAGTTTTGGTGTCCTCCTTCTCGAAATGCTTACTGGGAAAGCACCACCGATGTCTCCAGGACGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGGCCGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGGCATGGCATGTGTAGCAAAGGTTCCGGACATGAGACCTAGCATGGAGGAGGTAGTGAGGATGATCGAAGAGATCCGGCTATCTGACTCCGAGAACCGGCCGTCTTCGGAAGAGAATAAATCCAAGGACTCAAATGTTCAAACTACTCCATGA 1992 0.4357 MEEVTSNSIVNILYLSARIHSMKFYSPLVHPLFFIIVILSPLVFADLSSDKQALLDFAAAVPHRRNLRWNSSADVCTSWIGVTCNSNGTRVVSLRLPGIGLVGTIPADTLGKLDALRNLSLRSNLLVGSLPADITSLPLLQDLYLQHNNLSGNIPTSLPPQLNVLDLSYNSFTGGIPKALQNLTQLTRLSLQNNSLSGEIPNLNVAKLRHLNLSYNHFNGSIPPVLKNFPNSSFEGNSHLCGLPLKPCSVAPPEPSPSAPPTPSPHVRKSSKHKLSKAAIIAIAVGGGVLLLLLVLVIVLCCCLKKKDDGNERPSSVSKGKGSSVGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVSKKDFEQQMEIIGRVRQHPNVLPLRAYYYSKDEKLLVYDYVPGGNLSTLLHANRASARTPLDWDSRLKLSLGIAKGIAHIHSVGGPKFTHGNVKASNVLISQENDGYISDFGLTPLMNVPTAPTRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPPMSPGREXXXXXXXXXXXXXXXXXXXTAEVFDVELMRYQNIEEEMVQMLQIGMACVAKVPDMRPSMEEVVRMIEEIRLSDSENRPSSEENKSKDSNVQTTP 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121541g00005 663 FunFam pollen receptor-like kinase 1 333 440 - -
Stsc121541g00005 663 ProSiteProfiles Protein kinase domain profile. 365 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121541g00005 663 PANTHER OS05G0588300 PROTEIN 33 650 - -
Stsc121541g00005 663 Gene3D Ribonuclease Inhibitor 48 160 IPR032675 -
Stsc121541g00005 663 SUPERFAMILY L domain-like 61 248 - -
Stsc121541g00005 663 Coils Coil 589 591 - -
Stsc121541g00005 663 MobiDBLite consensus disorder prediction 637 653 - -
Stsc121541g00005 663 Coils Coil 568 569 - -
Stsc121541g00005 663 MobiDBLite consensus disorder prediction 637 663 - -
Stsc121541g00005 663 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Stsc121541g00005 663 Gene3D Transferase(Phosphotransferase) domain 1 441 662 - -
Stsc121541g00005 663 Pfam Protein kinase domain 368 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121541g00005 663 FunFam Leucine-rich repeat receptor-like protein kinase 160 248 - -
Stsc121541g00005 663 MobiDBLite consensus disorder prediction 251 270 - -
Stsc121541g00005 663 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 441 650 - -
Stsc121541g00005 663 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Stsc121541g00005 663 Gene3D Ribonuclease Inhibitor 161 251 IPR032675 -
Stsc121541g00005 663 MobiDBLite consensus disorder prediction 312 338 - -
Stsc121541g00005 663 SUPERFAMILY Protein kinase-like (PK-like) 369 645 IPR011009 -
Stsc121541g00005 663 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Stsc121541g00005 663 Gene3D Phosphorylase Kinase; domain 1 333 440 - -
Stsc121541g00005 663 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515
Stsc121541g00005 663 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121541g00005 Stsc-Chr121541 19823 23877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121541g00005 21 660 Receptor kinase-like Gene Family AT5G58300 65.379 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc121541g00005 Pkinase 5.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121541g00005 - - gmx:100818344 928.702