Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121537g00001 ATGCCAACAGTGTGGTTCTCACTGAAGAAGTCACTACACTGCAAATCAGAGCCATCAGAAGTTCATGACCCTAAATCAAGGAAGCAGCAATTGAGCACAATCTTAACCACAAAGAGGGCATCAGGTAGGTCAGGTTGCTCAAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATTGAGAAGCCACCAACTTGCAGCCCAAGATCCATAGGTAGCAGTGAGTTCCTCAACCCAATAACACATGAAGTCATCTTGAGCAATTCAAGGTGTGAGCTCAAAATCACTGGCTATGGTGGAGGGTTCCATGAGGGGCTTGGAACTGCTGGTAATAATGGTAATAACAACAATGGTGGTGGTCTTGGTAGTGAAAATTCAACATTTGTTGGAACTTTAAGGCCTGGTACTCCTGGACCTGGAGGGCACCCTACAATGCATTACTTTAACCCTTCTTTTAGGCCTTCAACCACCCCACCAAGGAAATCTCCTTTCCTTTTAGGAGATAGTAATAAAGAAGGGTCTGGCTTCCATGGTGGTGGTGGTGCTGCTGCTGGGTTTCATCATTCAAGCAATAGATTGTCTCTGGAGACAGATTCCAATGGGGCTTGTACTATTACTTGTCACAAATGTGGAGAGCAATTCACCAAATGGGATGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTAACTGAACTTGTGGAAGCCAAGAAGGAACTCAAGGGTGGAATTGGTGTTTTCACCACTTCAACAAGTGGAAGAGCCTTTGAATCCATTGAGGTTATTGACCAAGACCCTTCACTGAGAAAAGTGTTGATAGTGTGCAGAGTTATTGCTGGCAGGGTCCATAGGCCTCTAGAGAATATTCAAGAGATTGCAGGGCAAACAGGATTTGATTCATTGGCAGGGAAAGTTGGTCTTTATTCAAACATTGAAGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCCTGA 1011 0.4461 MPTVWFSLKKSLHCKSEPSEVHDPKSRKQQLSTILTTKRASGRSGCSRSIANLKDVIHGSKRHIEKPPTCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGGFHEGLGTAGNNGNNNNGGGLGSENSTFVGTLRPGTPGPGGHPTMHYFNPSFRPSTTPPRKSPFLLGDSNKEGSGFHGGGGAAAGFHHSSNRLSLETDSNGACTITCHKCGEQFTKWDAAEAHHLSKHAVTELVEAKKELKGGIGVFTTSTSGRAFESIEVIDQDPSLRKVLIVCRVIAGRVHRPLENIQEIAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121537g00001 336 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 245 334 - -
Stsc121537g00001 336 ProSitePatterns Zinc finger C2H2 type domain signature. 211 232 IPR013087 -
Stsc121537g00001 336 SUPERFAMILY ADP-ribosylation 247 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121537g00001 Stsc-Chr121537 2407 4235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121537g00001 240 336 C2H2 Transcription Factor Family AT5G54630 71.154 3.73e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121537g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121537g00001 - - rcu:8286903 348.206