Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121535g00004 ATGGAGAGAGATTTTTTCGGTTTGAGTTCCAAAAGTGATGCAGGGACTACTATCAATGATGATTCAGTGAGGGCTTCAGGCATGCATTGGACATTCTCAAACAAAGTCTCGTCCTCTCCTCAGTTCTTGTCCTTCAAGACGACACTGGAAGATGCGCAGAGAAAGACAATTATGGATCCACTAGCTTCATCTGGATATATGACCATATCAACTAAGTCTTCTTATGACACTGAACAGAAATCATTGTTGAGTGTGGTCCAGAGGAACATGTCCATAGGAAATCAAGCAGCAAACAACATTGGAATGACAGTGTATCCGCGGCCATGTTCTGGTGCACATTCAGCTAGCCAACTACAGGAATCAAGGATGTTTTCACTTTCCAGCCAAACGAATCAAGTGAGTCCTGTTCTTCAATCTAACCTTGCTACTACTACCGGATGCAGCATGGGCGCTTCAGTCATAAAACCACAACCCCTCGGTCCCAAATCCTCTGGCTCACCTCTATCTGCTCTTCCATCTGCAGGTTCCATTGTTGGCACTACTGACTTAAGGAATTCTTCCAAGACTTCTGGGACACCTACTCAGCTGACCATTTTCTATGCTGGTTCTGTATGTGTTTATGACGACATATCGCCCGAGAAGGCCCATGCTATCATGTTACTTGCTGGAAATGGCTCTCCTCTAAATCAGAACAACACAGTTCCCACAACTAAGTTGCAGCCAGCAATGTCTGTTCCCTCCAAGGATAATGGTTTCATTGCAAGCATGCCAATCTCTCTTCCAGCGACTTCTCTCGCTGTTTCTCTGCCTGGAGGAGTGTCTTCCAGCAGCAATGAAATCTCAATCATTAGACCAGTGGCGGTAGGACCTTCCACTGCCTGTACCAACAACATGGAATCTCCTAATGTTGCTTCAGTAAGATCTGCAGCTCAAAAAATGGTTAATACAGTAGGTTTGCCTCAGGCACGCAAAGCATCGTTAGCTCGGTTCTTGGAGAAGCGAAAGGAAAGGGTCATGAACACATCTCCATACACTTTAAGCAAGAAATCTTCAGCTGAAAGCAGCAATCCTGGATCAGATGGTATTAGTCTTTCCATGAACTCCTCCGGTTCCTGTCCGGTACTGGCGATTAACTAA 1137 0.4538 MERDFFGLSSKSDAGTTINDDSVRASGMHWTFSNKVSSSPQFLSFKTTLEDAQRKTIMDPLASSGYMTISTKSSYDTEQKSLLSVVQRNMSIGNQAANNIGMTVYPRPCSGAHSASQLQESRMFSLSSQTNQVSPVLQSNLATTTGCSMGASVIKPQPLGPKSSGSPLSALPSAGSIVGTTDLRNSSKTSGTPTQLTIFYAGSVCVYDDISPEKAHAIMLLAGNGSPLNQNNTVPTTKLQPAMSVPSKDNGFIASMPISLPATSLAVSLPGGVSSSSNEISIIRPVAVGPSTACTNNMESPNVASVRSAAQKMVNTVGLPQARKASLARFLEKRKERVMNTSPYTLSKKSSAESSNPGSDGISLSMNSSGSCPVLAIN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121535g00004 378 ProSiteProfiles Tify domain profile. 189 224 IPR010399 -
Stsc121535g00004 378 Pfam Jas motif 320 344 IPR018467 -
Stsc121535g00004 378 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 117 356 IPR040390 -
Stsc121535g00004 378 MobiDBLite consensus disorder prediction 339 366 - -
Stsc121535g00004 378 Pfam tify domain 192 223 IPR010399 -
Stsc121535g00004 378 MobiDBLite consensus disorder prediction 340 366 - -
Stsc121535g00004 378 SMART tify_2 189 224 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121535g00004 Stsc-Chr121535 10952 15874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121535g00004 28 353 Tify Gene Family AT3G17860 43.072 7.59e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc121535g00004 tify 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121535g00004 K13464 - gmx:100807288 409.838