Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121532g00001 ATGGCGGCGGCGACGGTGGTTCCGGCGACGGCGTCGCTCTACGTAGGAGACCTGCACCCTGATGTGTTGGACAGCGAGCTGTTCGAGGCGTTCTCGGAGTTCAAGAGCATCACCTCCGTTCGAATCTGCAAAGACGCTGCCACAGGGAAGTCACTCTGTTACGGTTACGTCAACTTCATTTCTCACCAAGACGCAAGTCGTGCAATTGAGTTGAAGAATCATTCTTTACTACATGGAAAAGTGATAAGGGTCATGTGGTCTCGTCGTGATCCTGATGTGAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAATGTATAGATAATGCTGGATTACATGATTTATTTCAAAAGTATGGAAATATCTTGTCCAGCAAAGTTGTCATGTCGGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATGCTGCCATCGAGAAGTTGAATGGCATTACTGTTAAAGATAAGCAGATATATGTCGGGAATTTTATGAAAAAGAGTGAACGCATATTGCCTGATCCTGAGGCCAAATATACAAATTTGTACATCAAGAATTTGGACCCGGATATTACAGAAGAACTCCTTCAGGAGAAGTTTTCCTCCTTTGGGAAAATTATGAGCCTGGCTATAGCAAACGATGCCAATGGGATGTCAAAGGGTTTTGCATTTGTGAACTATGATACCCCAGATGAAGCTAAACAGGCGATGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAATCTATATGTAGGCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCATCATCTGTTCGAAGAGAAGCGTAAGGAACAAATCATGAAATACAAGGGATCAAACATTTATGTGAAGAACATTAATGATAGCGTCACTGATAACCAACTACGAGAGCACTTCAGTGCATGTGGCACAATTATATCTGCTAAAGTCATGCAAGATGAGAAAGGTGGAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCTACCCCTGAGGAGGCCAATAAAGCAGTGAACACTTTTCATGGATGGAGGCCTAATGCTTTTGCACCTCCCACTAGACCATTTCAGCAGTCCGCAGCTCCTAACGTTTCAAACAATACTAGGCAGCATAGGCAAAACAGAGGCAGGATGAATGGACACACAAATTCACAGGGAAAACCATACTCTTCTCAGTCAGCAGTCTCTTCAAAAGAGTCAAGTTCCCAGCAGTCTGGACAAACTATTTTTGTTCTGGGAGGACACCGGCATGTGATGGAAAAAGGATCTGTAACTTCATCCTCTGGAGGGTCTCAGGGATCAGAAATGCTGCATAGTATGCTTGCTACTGCTATCCCGGAGCAACAGAAACAGATACTTGGCGAGCATCTTTACCCACTTATCAAGAAACTCAAGCCTACCTTAGCAGCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGCAGAATTGCTGCTCCTCCTGGAATCACCGGAATCACTTTCTGCCAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAACACCAAGGTTTCTGGCCAGGAAGCATTTCATCCGAACTTGCTCTCGCCCCAAGTTGCCGTTAACTGA 1623 0.4461 MAAATVVPATASLYVGDLHPDVLDSELFEAFSEFKSITSVRICKDAATGKSLCYGYVNFISHQDASRAIELKNHSLLHGKVIRVMWSRRDPDVRKSGRGNVFVKNLAECIDNAGLHDLFQKYGNILSSKVVMSEDGKSKGYGFVQFESEESANAAIEKLNGITVKDKQIYVGNFMKKSERILPDPEAKYTNLYIKNLDPDITEELLQEKFSSFGKIMSLAIANDANGMSKGFAFVNYDTPDEAKQAMEAMNGSQFGSKNLYVGRAQKKAEREQILHHLFEEKRKEQIMKYKGSNIYVKNINDSVTDNQLREHFSACGTIISAKVMQDEKGGSKGFGFVCFSTPEEANKAVNTFHGWRPNAFAPPTRPFQQSAAPNVSNNTRQHRQNRGRMNGHTNSQGKPYSSQSAVSSKESSSQQSGQTIFVLGGHRHVMEKGSVTSSSGGSQGSEMLHSMLATAIPEQQKQILGEHLYPLIKKLKPTLAAKITGMLLEMDNAELLLLLESPESLSAKVEEAVQVLKNTKVSGQEAFHPNLLSPQVAVN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121532g00001 540 Gene3D - 100 179 IPR012677 -
Stsc121532g00001 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Stsc121532g00001 540 FunFam Polyadenylate-binding protein 443 528 - -
Stsc121532g00001 540 FunFam Polyadenylate-binding protein 181 275 - -
Stsc121532g00001 540 SUPERFAMILY RNA-binding domain, RBD 189 356 IPR035979 GO:0003676
Stsc121532g00001 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Stsc121532g00001 540 Gene3D - 275 407 IPR012677 -
Stsc121532g00001 540 Gene3D - 3 99 IPR012677 -
Stsc121532g00001 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
Stsc121532g00001 540 SUPERFAMILY RNA-binding domain, RBD 11 178 IPR035979 GO:0003676
Stsc121532g00001 540 SUPERFAMILY PABC (PABP) domain 449 521 IPR036053 GO:0003723
Stsc121532g00001 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 355 IPR000504 GO:0003723
Stsc121532g00001 540 Gene3D - 180 274 IPR012677 -
Stsc121532g00001 540 SMART rrm2_1 12 85 IPR003954 GO:0003676
Stsc121532g00001 540 SMART rrm2_1 191 263 IPR003954 GO:0003676
Stsc121532g00001 540 SMART rrm2_1 100 172 IPR003954 GO:0003676
Stsc121532g00001 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 169 IPR000504 GO:0003723
Stsc121532g00001 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 83 IPR000504 GO:0003723
Stsc121532g00001 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 355 IPR000504 GO:0003723
Stsc121532g00001 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 260 IPR000504 GO:0003723
Stsc121532g00001 540 Gene3D - 443 522 - -
Stsc121532g00001 540 MobiDBLite consensus disorder prediction 364 418 - -
Stsc121532g00001 540 Pfam Poly-adenylate binding protein, unique domain 453 517 IPR002004 GO:0003723
Stsc121532g00001 540 FunFam Polyadenylate-binding protein 3 95 - -
Stsc121532g00001 540 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 445 522 IPR002004 GO:0003723
Stsc121532g00001 540 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 11 355 IPR006515 GO:0003723
Stsc121532g00001 540 MobiDBLite consensus disorder prediction 357 418 - -
Stsc121532g00001 540 CDD RRM2_I_PABPs 97 173 IPR045305 -
Stsc121532g00001 540 SMART rrm1_1 100 172 IPR000504 GO:0003723
Stsc121532g00001 540 SMART rrm1_1 191 263 IPR000504 GO:0003723
Stsc121532g00001 540 SMART rrm1_1 12 85 IPR000504 GO:0003723
Stsc121532g00001 540 SMART rrm1_1 294 361 IPR000504 GO:0003723
Stsc121532g00001 540 PANTHER RNA BINDING PROTEIN 289 397 - -
Stsc121532g00001 540 FunFam Polyadenylate-binding protein 96 180 - -
Stsc121532g00001 540 SMART poly_2 457 520 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121532g00001 Stsc-Chr121532 1578 5604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121532g00001 12 523 Eukaryotic Initiation Factors Gene Family AT2G36660 32.136 6.29e-54 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121532g00001 K13126 - oeu:111368976 586.645