Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121530g00002 ATGAACATGATCTCCCCTTGTTTTCTCTTCTTCCTTTTACTCCTTGCTACCATTTGTGTTTCCGCTTTAGCTCTTGGAGCTACGCATACCCAGTTGCCAGAAAATGAAGTACAAGCTCTGCGAAACATAGCAAAGACACTTGGTATCAAGAATTGGAATCCTAGCGTAGATGAATGCAATAAGGTGGGACAAAACAATTGGAGTTCTTGTTCGGAATTGAAAGATGATACATATCAGAATGTTGTCATCTGCAATTGCTCCAGTAACACCGTTTGTCATGTCACTAACTTATGCATGAAACGGCAAAATCTCCCGGGTATGCTGCCGCCAGAACTAGTGAGGTTGCCTTACCTTCAAGAAATTGATCTTACTTTTAACTACCTTAATGGAACAATCCCAACAGACTGGGGCTCCATGAATCTTCTCATCAACATTTCTCTTGGGGGAAATCGGTTAACGGGTCGAATACCAAAAGAGATAGCAAACATATCCACTCTCCAGAGTTTTGTTGTGGAGTCCAATCAAATGTATGGAGATCTTCCTCTTGAGCTTGGGAATTTGACCCAGATTCGAAGGCTGATACTTTCCTCAAACAATTTTACGGGAGAGCTACCTGCAACACTTGCCAACCTCACTAACTTAGAGGATATTCGACTTGGGGACAATCAATTCTCTGGAAAGATTCCTGATTTTATAGAAAGCTGGACAAATCTCAAAACATTAAATATTATAGGGAGTGGACTCAGCGGACCAATTCCTTCTGCTATTTCAAAATTGAGAAACTTAACTGACTTGATTCTAAGAAGTTGCAACATTCATGGAACACTACAGGACTATCTCTCAACAATGGAAATATCACAAATCTTAGACCTCAGCTTTAACAAATTGACTGGACCAATTCCACCTTCCTATAAGAATCTGAAACAAGTGAATCACATATTCTTAACTGGAAATCTTCTCAATGGATCATTGCCTTCAATATGGAAGAGTGATGCTACTAGCTTAGACGTTTCATATAATAACTTCAACCAAGATAATCAGCAATGCCAATATGGAAAAGTGAACTTGTTTGCAGCTAACTCTCCCACAATTAACAATTCAGGAATTGTTTCATGTTTGAGAAGCTCTGTCTCTGGTTGTTCTAAAGTCAACTCTATCCATATAAACTGTGGAGGAACATCGTTAAAAGTGAAGGGAATCACATATGATGAAGATTTTCATGAAGGGACAGCATTGTTTGACAGAGGTCAAAACAGAAACTGGGCAATTAGCACCACCGGTGACTACATGGATGTAGAAGCAGAGCATTCTACTGCCTCATTAAATGACACTTCTGACCTCTCTTTCAATGATGATCATCGCCAACTATACACCAATGCACGAATTTCTCCTATTTCTCTAACTTACTATGGGTTTTGCCTTCATGATGGAAACTACAAAGTCAACCTTCATTTTGCTGAGATCATGTTCACCAATGATCAAACTTATAGAAGCCTTGGAAGGCGTCTATTTGACATCTATATTCAGGGAGTTGTGGTGGAGAAGGATTTTAATATTGCAAAAGAAGCAGGAGGTGTTGGTAAGGCAATCATAAAATCTTACAGTGCAGCTGTGACTAATAATACCATTGAGATTCGATTATATTGGGCTGGAAAAGGGACAACTACAATCCCAGAGAAATCAGTGTACGGTCCTCTTATATCAGCCATATCTGTGGAGAACGGGGCTGTGATTGGAATTGTGGCCGCAGTGGTAATTATCATCATCATCTTAATACTTGGTGTGCTTTGGTGGAAGGGCTACCTAGGAAAGAAAAAATCTTCTTCCAGAGAATTTATGAGTTTAGATATACAGACAAGCTTATTTTCCTTACGACAAATCAAAGCAGCAACAAATAACTTTGATATCACCAACAAAATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGAGAGTTACCTAATGGTACAATAATAGCAGTGAAGCAGCTTTCTTCAAAATCAAGGCAAGGAAATCGCGAGTTCTTAAATGAAATAGGCATGATTTCTGCTTTACAACATCCTTGTCTTGTTAAACTCTATGGATGTTGTGTTGAGGGAGATCAACTATTGTTGGTATACGAATACATGCAAAACAATAGCCTTGCTCGTGCTTTATTTGGTCCAAAGGAACACCAAATAAAATTGGATTGGCCAACAAGGCAAAAGATTTGTATTGGTATTGCTAGAGGCTTAGCATACCTCCATGAAGAATCAAGATTGAAGATAGTTCATAGAGACATTAAAGCCACAAATGTCTTGCTTGACAGAGATCTTAATCCAAAGATATCAGATTTTGGTTTAGCGAAACTTGATGAAGAGGAAAATACCCACATTAGCACCCGAATAGCAGGAACATACGGATATATGGCTCCGGAATATGCAATGCATGGCTATTTAACTGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCGTTGGAAATCATTAGTGGGAGTACTAATACAACTCAGCGGGCAAAAGAAAAAGTAATTTATCTGCTTGATCTGGCACGTTTATTGAAAGAGAAAGGCAATCTAATGGAGCTAGTTGATAGAAGATTGGGCTCAAACTTTGATGAAGAGGAAGCCATGATAATGATTAAGGTAGCTCTACTATGCACTAATGTGTCTCCAACACTTAGACCAAACATGTCTTCCGTGGTAAGCATGTTAGAAGGCAAAACTATAGTTCAAGAACCAAGTCCTGAGCCAAGTGAGGCATTGGATGAGAAGAAATTAGAGGCAATGAGATTGTATTGTTTTGAAGAACAAAGTACCTCAATGGAGGATCCATGGACTGCTTCATCCACTTCTGCAAGAGATTTGTATCCATTATATTTGGACTCTTCTTACTTAGACAAGAGAGATCATTAG 2916 0.3896 MNMISPCFLFFLLLLATICVSALALGATHTQLPENEVQALRNIAKTLGIKNWNPSVDECNKVGQNNWSSCSELKDDTYQNVVICNCSSNTVCHVTNLCMKRQNLPGMLPPELVRLPYLQEIDLTFNYLNGTIPTDWGSMNLLINISLGGNRLTGRIPKEIANISTLQSFVVESNQMYGDLPLELGNLTQIRRLILSSNNFTGELPATLANLTNLEDIRLGDNQFSGKIPDFIESWTNLKTLNIIGSGLSGPIPSAISKLRNLTDLILRSCNIHGTLQDYLSTMEISQILDLSFNKLTGPIPPSYKNLKQVNHIFLTGNLLNGSLPSIWKSDATSLDVSYNNFNQDNQQCQYGKVNLFAANSPTINNSGIVSCLRSSVSGCSKVNSIHINCGGTSLKVKGITYDEDFHEGTALFDRGQNRNWAISTTGDYMDVEAEHSTASLNDTSDLSFNDDHRQLYTNARISPISLTYYGFCLHDGNYKVNLHFAEIMFTNDQTYRSLGRRLFDIYIQGVVVEKDFNIAKEAGGVGKAIIKSYSAAVTNNTIEIRLYWAGKGTTTIPEKSVYGPLISAISVENGAVIGIVAAVVIIIIILILGVLWWKGYLGKKKSSSREFMSLDIQTSLFSLRQIKAATNNFDITNKIGEGGFGPVYKGELPNGTIIAVKQLSSKSRQGNREFLNEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMQNNSLARALFGPKEHQIKLDWPTRQKICIGIARGLAYLHEESRLKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIISGSTNTTQRAKEKVIYLLDLARLLKEKGNLMELVDRRLGSNFDEEEAMIMIKVALLCTNVSPTLRPNMSSVVSMLEGKTIVQEPSPEPSEALDEKKLEAMRLYCFEEQSTSMEDPWTASSTSARDLYPLYLDSSYLDKRDH 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121530g00002 971 Pfam Protein tyrosine and serine/threonine kinase 636 904 IPR001245 GO:0004672|GO:0006468
Stsc121530g00002 971 ProSiteProfiles Protein kinase domain profile. 634 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121530g00002 971 CDD STKc_IRAK 640 907 - -
Stsc121530g00002 971 Gene3D - 383 577 - -
Stsc121530g00002 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Stsc121530g00002 971 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 603 709 - -
Stsc121530g00002 971 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 383 575 - -
Stsc121530g00002 971 Pfam Malectin domain 385 570 IPR021720 -
Stsc121530g00002 971 Gene3D Transferase(Phosphotransferase) domain 1 710 921 - -
Stsc121530g00002 971 FunFam Leucine-rich repeat receptor protein kinase EMS1 156 252 - -
Stsc121530g00002 971 SUPERFAMILY Protein kinase-like (PK-like) 608 908 IPR011009 -
Stsc121530g00002 971 Gene3D Ribonuclease Inhibitor 244 358 IPR032675 -
Stsc121530g00002 971 Gene3D Ribonuclease Inhibitor 33 243 IPR032675 -
Stsc121530g00002 971 FunFam Putative LRR receptor-like serine/threonine-protein kinase 710 917 - -
Stsc121530g00002 971 Gene3D Phosphorylase Kinase; domain 1 600 709 - -
Stsc121530g00002 971 SMART serkin_6 634 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121530g00002 971 SUPERFAMILY L domain-like 83 341 - -
Stsc121530g00002 971 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121530g00002 Stsc-Chr121530 7757 19225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121530g00002 27 955 Receptor kinase-like Gene Family AT1G53420 53.019 0.0 958
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121530g00002 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121530g00002 - - gmx:732563 1201.81