Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121529g00002 ATGGCGGTTTTACCTGGAAGCTCCTCCAGCTTAGAATTGACCATATCTGTCCCAGGCTTTGCTTCTTCACCACCTCTCCTTCCATCATCATCTGTGAAAGAATTGGACATAAACCAAATACCGTCAGAGGAAGAATGGATTGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGAAGCTCCACGCAAGAAACTCCGCCTCACAAAAGAACAATCTCGTCTCCTTGAAGAAAGCTTTAGACAAAATCACACTTTAAACCCTAAACAGAAAGAGTCATTGGCAATGCAACTGAAGCTAAGAGCAAGGCAAGTGGAGGTTTGGTTTCAAAACCGTAGGGCCAGAAAAATTGGGGGAGCGTACAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTTAAGAGGTGGTTTGGGTCGCTGACAGAGCAGAACAGAAGGCTTCACAGGGAAGTCGAAGAGCTCAGGGCCATGAAGGTGGGCCCACCAACCGTCCTCTCCCCTCACACTAGCCAGCCACTCCCAGCTTCAACCCTAACCATGTGTCCCCGCTGCGAGCGTGTCACCACCACCATCCCCGCCGCCACCGTCCCCACCTCAACTACTGCTATGTTATCTTCCCCTAAATCGCATCAACCTCCAGAAGCTTCTTCATGA 663 0.5008 MAVLPGSSSSLELTISVPGFASSPPLLPSSSVKELDINQIPSEEEWIASNMEDEEESSNGEAPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRARQVEVWFQNRRARKIGGAYRSKLKQTEMECEYLKRWFGSLTEQNRRLHREVEELRAMKVGPPTVLSPHTSQPLPASTLTMCPRCERVTTTIPAATVPTSTTAMLSSPKSHQPPEASS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121529g00002 220 SMART HOX_1 62 124 IPR001356 GO:0003677
Stsc121529g00002 220 SUPERFAMILY Homeodomain-like 53 116 IPR009057 -
Stsc121529g00002 220 MobiDBLite consensus disorder prediction 198 220 - -
Stsc121529g00002 220 Coils Coil 140 160 - -
Stsc121529g00002 220 MobiDBLite consensus disorder prediction 43 67 - -
Stsc121529g00002 220 CDD homeodomain 63 116 IPR001356 GO:0003677
Stsc121529g00002 220 Pfam Homeodomain 64 116 IPR001356 GO:0003677
Stsc121529g00002 220 FunFam Homeobox-leucine zipper protein 18 48 132 - -
Stsc121529g00002 220 Gene3D - 56 130 - -
Stsc121529g00002 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 34 211 - -
Stsc121529g00002 220 SMART halz 127 170 IPR003106 GO:0006355|GO:0043565
Stsc121529g00002 220 Pfam Homeobox associated leucine zipper 127 161 IPR003106 GO:0006355|GO:0043565
Stsc121529g00002 220 ProSiteProfiles 'Homeobox' domain profile. 60 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121529g00002 Stsc-Chr121529 17796 24027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121529g00002 32 207 Homeobox Transcription Factor Family AT1G70920 57.459 2.78e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc121529g00002 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121529g00002 K09338 - gmx:100775341 333.954