Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121522g00005 ATGGACTTGGGAGAAGACACCGACCTCTCACAACCCTACACTCAATCCCAGCAAGAAGGTGAACCACACCTCCTCGGCTTCATCACCGCCAACATCGTCGGCCTCCGCTACTACTCCGGCACCGTCAACGGCCGCGAGATGGTAGCCCTCCTCCGCGAACCTCTCAACCCCCACGACCCCAACGCCATCAAAGTCCTCAACACCCGCACCATCCAGGTCGGTCACATTGAGCGCACCGTCGCCGCCGCACTTTCCCCTCTCATCGACTCCGAACTCATCACCGTCGAGGCCATCGTCCCCAACCGCCGCTCCAAGACCAACCGCTTCCGCCTCCCTTGCCAAATCCACATCTTCGCCCCTCTCCCTTCTTTCCCCACTGTTTCTCAACTCATTTCCGAAAGCGGCCTCCACCTCATCACACAAAACGACGCCTCCTTTACGTTGTCGGATTCCGTCGCCGTGAAAGAGACCCGCGCTGATAGCAGGTTCAAGAATGTGGACGAGATTTTCAGGCTTGTTGATGAGAGCTTGACGGCGAAAGAGCGCGTCTCTCACGCTCTGGAGCCTCCTGAGAGCATTGTGAGGTCGAAGCTTATGGAGCACCAGAAGGAAGGCCTTTGGTGGCTACTCAACAGAGAGAAAAGCGAGGAGCTTCCGCCGTTTTGGGAGCAGGGAGAAGGGGGCGAGTTCGTCAACGTCTTGACCAATTACAGCACGTGCGTAAAGCCAGAGCCTTTGAGGGGAGGCATCTTCGCCGATGCAATGGGACTTGGAAAGACTCTCACTTTGCTCTCTCTTATTGCTCTTGACAAGTGTGGCGGCGATGGTAAGAAGAAGGGAAAGAAGAGAAGAAAGATTGAGAGTGGGGAGAGTAGTGCAACGCTTGTTGTGTGCCCTCCCTCTGTGTTTTCGACATGGATTTTGCAATTGGAGGAACACACTGTGCCTGGCTCACTCACGACTTGCATGTACTATGGTGACAGGAGGGCTAAGAATGCTGAGGAGTTGATGGATTATGATTTGGTGCTCACCACTTACTCTACACTCTCAATGGAGGAGGATGCGGCTGACTCGCCGGTGAAGAAGGTGGTGTGGAGGAGGATCATATTGGATGAGGCTCACATCATCAAGAATTCGAATGCCCGGCAGAGCAAGATGGTTATTAGCCTCAATGCCAAGAGCAGGTGGGCTGTCACTGGCACACCCATTCAGAATGGCTCCTTGGACTTGTTTTCACTCATGGCTTTCTTGCATTTTGAGCCCTTCTCCATCAAGAGCTATTGGCGTAGCCTCGTGCAACGGCCTCTTAATCAGGGTCTTCAGAGTGGCCTCTCACGCCTCCAGGTTTTGATGGCGGCAATTTCCTTACGAAGAACAAAAGACAATGGATTGTTAGGGCTGCCACCAAAAACCATAGAGACTCAATATGTTGAACTTTATTCAGAAGAACGTGAACTGTATGATCGGGTGAAAGAGGAAGCGATGCTATTAATGAGGAGTTTTAACAATGGAACCAACAATTTTCCTGTTGTGCTAAGTATGCTTTTACGTCTTCGCCAAATCTGTACTGATTTAGCATTATGCCCGAATGATCTCGCAATGACTTTCCGTTCAACTAATCTTGAAGATGTTTCCAATAACCCGCAGTTGTTGCAAAAGTTGGTTGAGATGCTGCAAGATGGTGAAGATTTTGAGTGCCCAATTTGCATTTCTCCTTCAGCAGACATTGTTATCACCCGCTGTGCTCACATCTTCTGCCGTGTCTGTATTCTGAAATCTCTACAATCCAGCAAATCCCGTTGTCCTCTTTGCCGTCAAGCCCTATCTGAATCTGATTTGTTCTCAGCCCCAGTTGAGTCTTCTAAAGCTGATAGTACTGCTTCATCCTCATCATCAGATAAAAAGTTATCTTCCAAAGCATCTGCTTTGATAAAATTTCTCAAGGAATCAAGAGAACAGAATCCAGCAGCAAATTCAGTAGTGTTTTCACAATTTCGCAAGTTGTTAGTGTTATTGGAAGCACCTTTGAAGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTCGATGACGGCTAAACAGAGGGCTAATGTTATTGATCAATTTCAAGGCAGTAAAGGAGATGGACCAACCATTCTGCTTGCAAGCCTTAGGGCTTCAGGTGCAGGTATAAATCTGACAGCTGCCTCCACGGTGTATTTCATGGAGCCATGGTGGAATCCGGCTGTGGAGGAACAGGCAATGGATCGCATCCATCGTATTGGACAGAAAGAGGCTGTGAAGATTGTTAGATTGGTTGCTCAGGACAGCATAGAGGAAAAGATATTGATGTTGCAAGAGAAGAAGAAAGAACTAGCAAGGGAAACATTTAGAAAGAGGGGAAGTGATTCTGGTGGCATGAGCTATAAAGATCTAAGTTTCCTCATGTCCATGGAATGA 2439 0.4891 MDLGEDTDLSQPYTQSQQEGEPHLLGFITANIVGLRYYSGTVNGREMVALLREPLNPHDPNAIKVLNTRTIQVGHIERTVAAALSPLIDSELITVEAIVPNRRSKTNRFRLPCQIHIFAPLPSFPTVSQLISESGLHLITQNDASFTLSDSVAVKETRADSRFKNVDEIFRLVDESLTAKERVSHALEPPESIVRSKLMEHQKEGLWWLLNREKSEELPPFWEQGEGGEFVNVLTNYSTCVKPEPLRGGIFADAMGLGKTLTLLSLIALDKCGGDGKKKGKKRRKIESGESSATLVVCPPSVFSTWILQLEEHTVPGSLTTCMYYGDRRAKNAEELMDYDLVLTTYSTLSMEEDAADSPVKKVVWRRIILDEAHIIKNSNARQSKMVISLNAKSRWAVTGTPIQNGSLDLFSLMAFLHFEPFSIKSYWRSLVQRPLNQGLQSGLSRLQVLMAAISLRRTKDNGLLGLPPKTIETQYVELYSEERELYDRVKEEAMLLMRSFNNGTNNFPVVLSMLLRLRQICTDLALCPNDLAMTFRSTNLEDVSNNPQLLQKLVEMLQDGEDFECPICISPSADIVITRCAHIFCRVCILKSLQSSKSRCPLCRQALSESDLFSAPVESSKADSTASSSSSDKKLSSKASALIKFLKESREQNPAANSVVFSQFRKLLVLLEAPLKEAGFKTLRIDGSMTAKQRANVIDQFQGSKGDGPTILLASLRASGAGINLTAASTVYFMEPWWNPAVEEQAMDRIHRIGQKEAVKIVRLVAQDSIEEKILMLQEKKKELARETFRKRGSDSGGMSYKDLSFLMSME 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121522g00005 812 SMART helicmild6 670 755 IPR001650 -
Stsc121522g00005 812 CDD SF2_C_SNF 642 766 - -
Stsc121522g00005 812 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121522g00005 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 809 IPR027417 -
Stsc121522g00005 812 SMART ultradead3 194 434 IPR014001 -
Stsc121522g00005 812 SUPERFAMILY RING/U-box 549 610 - -
Stsc121522g00005 812 ProSiteProfiles Zinc finger RING-type profile. 566 605 IPR001841 -
Stsc121522g00005 812 Pfam SNF2-related domain 201 525 IPR000330 GO:0005524|GO:0140658
Stsc121522g00005 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 613 IPR013083 -
Stsc121522g00005 812 Gene3D - 169 482 IPR038718 -
Stsc121522g00005 812 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 642 806 IPR001650 -
Stsc121522g00005 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 456 IPR027417 -
Stsc121522g00005 812 Coils Coil 768 788 - -
Stsc121522g00005 812 CDD RING-HC_HLTF 561 613 - -
Stsc121522g00005 812 SMART HIRAN_2 25 121 IPR014905 GO:0003676|GO:0008270|GO:0016818
Stsc121522g00005 812 ProSitePatterns Zinc finger RING-type signature. 581 590 IPR017907 -
Stsc121522g00005 812 Gene3D - 614 804 IPR027417 -
Stsc121522g00005 812 Pfam Zinc finger, C3HC4 type (RING finger) 565 604 - -
Stsc121522g00005 812 Pfam HIRAN domain 26 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Stsc121522g00005 812 Pfam Helicase conserved C-terminal domain 639 755 IPR001650 -
Stsc121522g00005 812 Gene3D - 16 138 - -
Stsc121522g00005 812 SMART ring_2 566 604 IPR001841 -
Stsc121522g00005 812 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 240 420 IPR014001 -
Stsc121522g00005 812 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 157 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121522g00005 Stsc-Chr121522 22322 25623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121522g00005 3 811 RAD5 or RAD16-like Gene Family AT5G05130 56.925 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc121522g00005 SNF2_N 1.9e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121522g00005 K15711 - tcc:18598591 969.533