Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121522g00004 ATGGAGCAAATTCAAGATTACTTCGACGACGATCAAGATCAAGATCAAGATTTTGAGGATCACCAGAAACTTCTTGGCTACGTCAATGCCGAAATCCGCAACCCCAAAAACGACACCGGCAACGTCAACGACAGTGAGATCATGACCCTCGTCGGAGTCTCCTCCGACGCCATCGAAGTTTACAACAAGCACTCCCTCCCAGTCGGCACCGTCACCGGAGACATCCCCAAAGCACTGTACCCTCTCATCAAGTCCGGACAAATCTCGATCGAGGGCATCTCCCCCGCCCGCACCAACATGAATCTCCGCTTCGAAATCACAATCCAAATCGTAATCTACACCCCTGTCTATAGTTCCCGCTTTCTTACCGACTATATCTCCGAAACCAAAGTCCAACTCATTACCCCAAACGACGCCGAGTTTACGTTATCCGCTCCCGTTAAAGAAACCGCAGCGCTTAAGAGGTTCAAGGAGGTGGACGCCATTTTCCGGCGCCTTGGTGAGGAATTGTCTGCCAAAGAACGTGTTCCTGAAGCGCTGGAGCCTCCCGAGAGCATTGTGAGGACGAAGCTTCTGCAGCACCAGAAAGAAGGCCTGTGGTGGCTCGTAACCCGAGAGGAAAGCGAGGAGGTTCCGCCGTTTTGGGAGGAGACGACGGAAGGGGGAAAAGAACAGTTCTTGAACTGGTTGACGAAAGAGAGCACGTGCGTAAAGCCAGAGCCTTTGAAGGGAGGGATCTTGGCCGATGAAATGGGGCTCGGAAAGACTCTCACTTTGCTCTCTCTCATTGCACTCGATAAAGGTAAAGGCGATGGTGATAGTGGAGAGAGCAATGCAACGCTGGTTGTGTGCCCTGTGTCGGTGTTTTCGACATGGATTTCGCAGTTGGAGGAACACATTGTGCCTGGTTCACTCTCCTATTACAAGTACTATGGCGGTGACAGGACCAAGAAGGCCGAGGATCTGATGAATTTTGACTTGGTGCTGACTAGCTACTCTACAATGGCGTCGGAGGAGCCTGATGTTGAGTCGCCGGTGAAGAAGGTGGTGTGGAGGAGGATCATATTGGATGAGGCTCACACTATCAAGGATCCCGCTGCCGGCAAGAGCAAGATGGTTACGAAGCTGAATGCGAGGAGGAGGTGGGCTGTCACCGGCACACCCATCCAGAATGGCTCCGTGGACTTGTTCTCACTCATGGTATTCCTCCGCTTTGAGCCCTTCAACACAAGGGTCCATTGGCGTAGATTCCTTCAACGCCCTATCAATCAACGCTTGGACAGCGGCCTCCAGCGCCTCAAGGTTTTGATGGCGGCAATTTCGTTAAGAAGAACAAAAGACGAAGGGTTGTTAGGGTTGCCACCGAAAACCATAGAGACTCATTATGTTGAACTTAATGCAGAAGAACGTCAGCTGTATAATGAGGCGAAAGAGAAAGCCACGCTTTTATTGACCAGTTTTGAGTATGATCGTTTCAAGTTTCATGATGTTCTAAGTAAGCTCTTACGTCTTCGCCAAATCTGCACTGATTCAGCATTGTGTACTGAAGAACTTCCCACTGCTTTTAAAGATGTTTCCAATAAGCCACATTTGTTGCAAAAGTTTGTGGAGAAGCTTCAAGAAGAAAATTTTGAGTGCCCAATTTGCCTTTTTCCTAAAGAAGACCTGGTTATTACCAAGTGTGCTCACGTCTTCTGCCGGGCCTGTCTTCTCAAAGCTCTGGAGAACCAACCCGGCCTTTGTTCTTATTGCCGTGGATCCCTAGGTAAATCTGACTTGTTCTCCCCCATAGACCTCGCTCCTGCAGCTCAATTTACAAGGCTATCTTCCAAAGGACGTGCTTTGATCAAGTTTCTCCAAGAATCAAGAGAAGAGAAGCCGGCAGCAAAATCAGTAGTGTTTACACAATTCCGCAAGTTGTTAGTTTTGTTAGAAACCCCTTTGAAGGCGGCTGGTTTCAAGACCTTGAGACTTGATGGATCAATGAGTGCTGACCAGAGGACTAAAGTGATCAATGAATTTCAAGGCAGTGAAAGTGATGGAGCAACGGTTCTGCTTGCTACCCTCAGGGCTTCAGGTGCAGGTATAAATCTGACAGCTGCTAGCACAGTGTATTTCATGGAGCCATGGTGGAGTCCGGCGGTGGAGGGACAGGCGATGGATCGGGTGCATCGGATTGGACAGAAAGAGGCTGTGAAGATTGTTAGATTGGTTGCTAAGAACAGCATTGAGGAGAGGATATTGATGATGCTGAAGGAGAAGAAACAAGTAATAGCAATGGACCCCTCTAAGGAAAGGATAACTGATTCTGGTGGCATGACCTATGATAATCTCAAGTTTCTTTTGTTCGCTCCCTATTGA 2361 0.4875 MEQIQDYFDDDQDQDQDFEDHQKLLGYVNAEIRNPKNDTGNVNDSEIMTLVGVSSDAIEVYNKHSLPVGTVTGDIPKALYPLIKSGQISIEGISPARTNMNLRFEITIQIVIYTPVYSSRFLTDYISETKVQLITPNDAEFTLSAPVKETAALKRFKEVDAIFRRLGEELSAKERVPEALEPPESIVRTKLLQHQKEGLWWLVTREESEEVPPFWEETTEGGKEQFLNWLTKESTCVKPEPLKGGILADEMGLGKTLTLLSLIALDKGKGDGDSGESNATLVVCPVSVFSTWISQLEEHIVPGSLSYYKYYGGDRTKKAEDLMNFDLVLTSYSTMASEEPDVESPVKKVVWRRIILDEAHTIKDPAAGKSKMVTKLNARRRWAVTGTPIQNGSVDLFSLMVFLRFEPFNTRVHWRRFLQRPINQRLDSGLQRLKVLMAAISLRRTKDEGLLGLPPKTIETHYVELNAEERQLYNEAKEKATLLLTSFEYDRFKFHDVLSKLLRLRQICTDSALCTEELPTAFKDVSNKPHLLQKFVEKLQEENFECPICLFPKEDLVITKCAHVFCRACLLKALENQPGLCSYCRGSLGKSDLFSPIDLAPAAQFTRLSSKGRALIKFLQESREEKPAAKSVVFTQFRKLLVLLETPLKAAGFKTLRLDGSMSADQRTKVINEFQGSESDGATVLLATLRASGAGINLTAASTVYFMEPWWSPAVEGQAMDRVHRIGQKEAVKIVRLVAKNSIEERILMMLKEKKQVIAMDPSKERITDSGGMTYDNLKFLLFAPY 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121522g00004 786 Pfam Ring finger domain 545 585 IPR001841 -
Stsc121522g00004 786 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 766 IPR001650 -
Stsc121522g00004 786 Gene3D - 454 779 IPR027417 -
Stsc121522g00004 786 SUPERFAMILY RING/U-box 540 599 - -
Stsc121522g00004 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 595 IPR013083 -
Stsc121522g00004 786 ProSitePatterns Zinc finger RING-type signature. 561 570 IPR017907 -
Stsc121522g00004 786 CDD SF2_C_SNF 601 738 - -
Stsc121522g00004 786 SMART ring_2 546 584 IPR001841 -
Stsc121522g00004 786 ProSiteProfiles Zinc finger RING-type profile. 546 585 IPR001841 -
Stsc121522g00004 786 SMART helicmild6 642 727 IPR001650 -
Stsc121522g00004 786 Pfam Helicase conserved C-terminal domain 614 727 IPR001650 -
Stsc121522g00004 786 Gene3D - 224 445 IPR038718 -
Stsc121522g00004 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 444 IPR027417 -
Stsc121522g00004 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 761 IPR027417 -
Stsc121522g00004 786 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 236 406 IPR014001 -
Stsc121522g00004 786 Pfam SNF2-related domain 194 511 IPR000330 GO:0005524|GO:0140658
Stsc121522g00004 786 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 157 780 - -
Stsc121522g00004 786 SMART ultradead3 187 415 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121522g00004 Stsc-Chr121522 18966 21520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121522g00004 2 766 RAD5 or RAD16-like Gene Family AT5G05130 47.186 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc121522g00004 SNF2_N 1.3e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121522g00004 K15711 - gmx:100791783 700.664