Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121522g00002 ATGAAGTCACTGGATCACTGGAGGAGTTACTTCAGGTCTTGTTCAGCTTCCTCGGATATATTTGAGATAATTGACCATGCGATCATGGTGGCGGCTTCTGATTGCCCCAAGGAGTTCAGGCTGAGGAGGGACCGAATTGCTGAGATGCTCTTCTCTTGCAAGCTGAGAAGATGCATAGGTTGTGACAAAGTTGAACTTTCTGTCCCCGGCGATGATGCTGGTGGTGGTGTTTATGTTAGCGGTGATGATGATGATGATGGGGACTTCAAGAGTGGTTTTCATCGCAATAGGGTTGGTGCTGGTGAGTTTGAAGCTGGGGCAAGCAAAGAGAGCAAGGTGAATAGCTCAAAAGATGATATTGATGATCTGGGTGACATGGATGTCAATAAGGTCCGCAGCAAGTATAGTTTCGGTGAAGCTGAGGCATTGACTTATGAAATAGAAGAGCAGTCTCAGTTTTTTGACGAGGTCTTGAGGATCAGAGGCATTCTCCGAAACCATCAAGAAGAGCCAGATGCAGTGTTGTTTGAGTCATTGAGGAGACTGCAACTGATGGAACTCACTGTTGATTGTCTCAAGGAAACAGAGATTGGAAAAGCTGTTATTCCTCTTAGAAAGAATGCTTCAAAGGATATCCGTCAACTCGCACGGAAGCTTATCGATGATTGGAAAGAAATGGTAGATGAGTGGGTCAATGCTACTGCTACCACTGCTATTGCAGGATCAGAAGGCACTCCAGATTCAGTAAATCCATCAGTTGTTGATGAAGAGGAAGGACTTCCATCACCTCCTTTGGATGATGCCGCTTTCCTTTTATCTGCAACCGGTTCAATAGAACTCTCACAGTTCTTTGACGGCATGGATGATGATGGAAATCCTCGACAAAGTGGGCAATTCAAGAACCGAGAAAATGGCAGAAAGCCATCAATGGACAACCAAAATATAGAGAAGAGGAAATCACAGGCTTCAAATGAGATGACAACAGGAGTTGCCAAGAGAAATGAGCCCACTGTGAGGCCAAGTAGACCAGCAACCGCTGATTCTGGTTCTGGCAGACCACCAAAGTCATGCATGCAGCAAAGAAGCAATGCTGAGCCAAAGCCGGAGCAAAAAGTAGGTAATGGTACAGTCACAAGGAAGCCTCCGGTCGAGCAGCAAAATTGCTCGGATGATTCTGCGAGGCTAGAAGACGCTAAGAGGAAACTTCAGGAGCGATATCAACAAGCCGAAAATGGTTTATTTCTTTTCTGA 1251 0.4564 MKSLDHWRSYFRSCSASSDIFEIIDHAIMVAASDCPKEFRLRRDRIAEMLFSCKLRRCIGCDKVELSVPGDDAGGGVYVSGDDDDDGDFKSGFHRNRVGAGEFEAGASKESKVNSSKDDIDDLGDMDVNKVRSKYSFGEAEALTYEIEEQSQFFDEVLRIRGILRNHQEEPDAVLFESLRRLQLMELTVDCLKETEIGKAVIPLRKNASKDIRQLARKLIDDWKEMVDEWVNATATTAIAGSEGTPDSVNPSVVDEEEGLPSPPLDDAAFLLSATGSIELSQFFDGMDDDGNPRQSGQFKNRENGRKPSMDNQNIEKRKSQASNEMTTGVAKRNEPTVRPSRPATADSGSGRPPKSCMQQRSNAEPKPEQKVGNGTVTRKPPVEQQNCSDDSARLEDAKRKLQERYQQAENGLFLF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121522g00002 416 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 411 IPR044805 -
Stsc121522g00002 416 MobiDBLite consensus disorder prediction 352 369 - -
Stsc121522g00002 416 MobiDBLite consensus disorder prediction 315 331 - -
Stsc121522g00002 416 Coils Coil 385 412 - -
Stsc121522g00002 416 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 146 239 IPR035441 -
Stsc121522g00002 416 MobiDBLite consensus disorder prediction 300 314 - -
Stsc121522g00002 416 ProSiteProfiles TFIIS N-terminal domain profile. 155 230 IPR017923 -
Stsc121522g00002 416 Pfam TFIIS helical bundle-like domain 179 227 IPR017923 -
Stsc121522g00002 416 CDD TFIIS_I 155 228 - -
Stsc121522g00002 416 SMART TFS2_5 154 229 IPR003617 GO:0005634
Stsc121522g00002 416 MobiDBLite consensus disorder prediction 238 268 - -
Stsc121522g00002 416 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 148 235 IPR035441 -
Stsc121522g00002 416 MobiDBLite consensus disorder prediction 283 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121522g00002 Stsc-Chr121522 3798 7242 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc121522g00002 Med26 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121522g00002 - - gmx:100799367 481.87