Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121521g00003 ATGGAACTGAGTGGTACAATTGATGTTGACACATTGTTTCAGTTGTCAAATTTGACAAGTTTCAGTGTAATTGGAAACAACTTTGAGGGTCCAATGCCTGAATTCAAGAAGATTGTGTGGCTAAGAGCTTTGTTTCTTTCAAATAACAGATTCTCTGGTGAGATTGATGATGATGCTTTTGAGGGTATGAGAAGATTGAAGAAGGTGCACTTGGCAGAGAATGGGTTCAGTGGTTACATTCCAAAGTCCATTGCTGAATTGCCTAAGCTTTTGGAATTGGACTTAAGTGGTAACATTTTTCAAGGCCTAATTCCACAGTTTCATCAAAAGAATCTCAACTTCAATGTGTTTGATTTATCAAACAACCAGTTGGAGGGTATGATACCTGAAAGCTTAATCAACCAAGATCCATCCTCATTTGCTGCCAACAAATATCTATGTGGAAAGCCATTGAACAAGAGCTGCAATGCCACTCCTAATGTGACTTTTGAATTCACTTCACCTCGGCCAAAGCCAAACCACCATACTTTTATAATTGTTATTACGGTGGCCGCCATCGTGGTGGCTTCAATACTAGCAGTTCTGTGCATCCACGGCCTCCGTGGCCGACGACGGCCTTTGAAATCGAGCAAGAAACTAATAAAAACAACACCCCATACCAATCACTCAGCATACAACACCAATGGTGCACAATCAATTGTTGTTGTGACAAATAATTTCATCAAAGAAGAAAATGGAGAGTTAAAATTTGTTAGAGAAGATAGAAGGAACACATTTGATTTGCAAGGGTTGCTTAGGGCTTCAGCAGAGGTACTTGGTAGTGGTAGTTTTGGTTCTACCTACAAGGCTATGGTTTTGAATAATAATAGTGGTAAAGAAGAAGCAATGGTTGTGAAGAGGTTTAGGCACATGAACGATGTTGGGAAACATGAGTTCTATGAACACATGAGAAAGCTTGGGAGTTTGTCACACCCTAATTTGCTTCCTCTTGTTGCATTCCATTATAGAAAACAAGACAAGTTTTTGGTTTACGATTTTGGTGAAAATGGAAGCTTGGCTACTCATCTGCATGGTAGGAATAATGGATGTATGCTAAGGTGGCCAACACGTTTAAAGATCATAAAAGGAGTTGCAAGGGGACTTGCATATCTCTACACACACTTCCCAAACCAAAGACTCCCACATGGCCATCTCAAATCCTCCAACGTAATCCTCGATGCAGAATTCGAGCCACATCTAACGGAATACGGACTCATACGCGTCATGAACAAGAGCCACGCTCTCAAGTTCATGGCGGCATACAAGTCCCCTGAGTCATCTCACCGGGCAAATGCCGTGACCGAGAAGACCGACGTGTGGTGTCTGGGAATCTTGATTCTAGAAGTGCTGACTGGGAGATTCCCAGCAAACTATCTGAGCCATGGAGGGAAGGGTGAGAATAATGCTGACCTGGCAAGTTGGGTGAACACGGTGGTCAGGGAAGAGTGGAGTGGTGAAGTGTTTGATGAGGATATAATGGGAATAAGAAATAATAATAATGGTAGTGAGGGTGAGATGTTGAAGCTTTTGAGGATTGGGATGTGTTGTTGTGAGTGGGATTTGGAGAGTAGGTGGCATTTGAGAGAAGCATTGGAAAAGATTGAAGAGGTGAAGGAGAATAATAATGAAATAATAAGAGATTATGATAATAATTCTTATGTTAGTGATGGAGATTTGTATTCTAAGGCTACTTCTTTCACTGATGATGACTTCTCTTTCTCAGTTACTGCTAATAGTTGA 1779 0.412 MELSGTIDVDTLFQLSNLTSFSVIGNNFEGPMPEFKKIVWLRALFLSNNRFSGEIDDDAFEGMRRLKKVHLAENGFSGYIPKSIAELPKLLELDLSGNIFQGLIPQFHQKNLNFNVFDLSNNQLEGMIPESLINQDPSSFAANKYLCGKPLNKSCNATPNVTFEFTSPRPKPNHHTFIIVITVAAIVVASILAVLCIHGLRGRRRPLKSSKKLIKTTPHTNHSAYNTNGAQSIVVVTNNFIKEENGELKFVREDRRNTFDLQGLLRASAEVLGSGSFGSTYKAMVLNNNSGKEEAMVVKRFRHMNDVGKHEFYEHMRKLGSLSHPNLLPLVAFHYRKQDKFLVYDFGENGSLATHLHGRNNGCMLRWPTRLKIIKGVARGLAYLYTHFPNQRLPHGHLKSSNVILDAEFEPHLTEYGLIRVMNKSHALKFMAAYKSPESSHRANAVTEKTDVWCLGILILEVLTGRFPANYLSHGGKGENNADLASWVNTVVREEWSGEVFDEDIMGIRNNNNGSEGEMLKLLRIGMCCCEWDLESRWHLREALEKIEEVKENNNEIIRDYDNNSYVSDGDLYSKATSFTDDDFSFSVTANS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121521g00003 592 Pfam Protein tyrosine and serine/threonine kinase 270 470 IPR001245 GO:0004672|GO:0006468
Stsc121521g00003 592 SUPERFAMILY Protein kinase-like (PK-like) 270 552 IPR011009 -
Stsc121521g00003 592 ProSiteProfiles Protein kinase domain profile. 266 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121521g00003 592 Pfam Leucine rich repeat 41 98 IPR001611 GO:0005515
Stsc121521g00003 592 Gene3D Transferase(Phosphotransferase) domain 1 348 572 - -
Stsc121521g00003 592 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 557 IPR046959 -
Stsc121521g00003 592 Coils Coil 540 564 - -
Stsc121521g00003 592 ProSitePatterns Protein kinases ATP-binding region signature. 272 299 IPR017441 GO:0005524
Stsc121521g00003 592 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
Stsc121521g00003 592 Gene3D Phosphorylase Kinase; domain 1 235 346 - -
Stsc121521g00003 592 SUPERFAMILY L domain-like 7 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121521g00003 Stsc-Chr121521 7603 11514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121521g00003 1 581 Receptor kinase-like Gene Family AT5G35390 45.500 1.00e-160 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc121521g00003 PK_Tyr_Ser-Thr 3.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121521g00003 - - ahf:112754157 709.909