Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121518g00005 ATGGAAATGCCCGCACGAAGATCCAACTACACGTTACTAAGCCAAGTTCCCGACGACCACTTCTCCGGAAGCGGAGGCGGCGGTGCAGGTGGCGGAAGCACAGCGCCGTCGTCCTCCGGCGACGGGAAAAACAGCAGAGGAGGGAAGTTTGAGAACAGAGGAGCCTTCGATTGGGAACTCGTCGGCGATCAGAGAGCGACAAACCGGATCGGTAACGTTCACTCCTCGATCGGGCTGCAGAGGCAGTCCAGCGGAAGTAGTTACGGCGAGAGCTCTCTCTCCGGTGGCGGCGGTGACTTCTATGCTCCGACGCTGTCGACGGCGGCGGCGAGCGACGTAGACGGTTTTGGATACTACCACGAAGATGGTTTTAGGGTTGGTGAGCTGAGAACGAGGTTGCCGGAGGCTTCTGGAAGGAGTGCAGGAGGCGGTGGTGGTGGCGGCGGCGGCGGAAGTTCGTCTGGAAAGAGCTGGGCGCAGCAGACGGAGGAGAGCTACCAGCTGCAGTTAGCCCTGGCGCTCCGGCTCTCTTCCGACGCCACGTGCGCTGACGATCCGAATTTTCTTGATCCGGCGCCGGATGAATCGGGGATGAGGTCGACGAGCTCCGCCGAGGCGGTGTCGCATAGATTCTGGGTAAATGGTTGCTTGTCATACTCTGAAAAGGTTCCTGATGGCTTTTACCTAATTTATGGGATGGATTCCTATGTATGGACAGTTTGTACTGACCTGCAAGAAAATGGCCGAATTCCATCAGTTGATACACTAAAGTCCGTGGACCCTGGCATTGATTCTTCACTTGAAGTAGTTTTGGTGGATCGGCGTAGTGACCCTACTTTAAAAGATCTGCTAAGCAGAGTACATAGTATTTCATGTAGCAGCATAACACCCACTGAGGTAGTCGATCAACTTTCCAAGCTGGTTTGCAGTTGTATGGGGGGTTCAGCTTCTATTGGGGAGGATGACTTCTTTTCCGTCTGGAGAGATTGCAGTAATGATCTAAAGGATTGCTTAGGCTCTGTTGTTGTTCCCATAGGTAGTCTATCTGTTGGCCTCTGCAGGCATCGTGCTATATTATTCAAAGTACTAGCCGATGCCATTGATTTACCCTGCCGAATTGCAAAGGGCTGTAAATATTGCAAAAGGGATGATGCTGCATCTTGTCTTGTCCGATTTGGGCTTGAGAGGGAGTATCTTGTTGATTTTATTGGGAAGCCAGGATCCTTGTCCGAGCCTGATTCCGTGCTCAATGGTCCATCATCCATCTCATTTTCTTCACCGTTGCGCTTTCCCAGACATAAAGCAGCTGAACCTACCATTGATTTCAGGTCATTGGCCCAACAGTATTTCTCTGACTGTCAATCCCTTGAGCTTGTTTTTGAAAACAGTTCTGCAGAACAGTTTGATGGAAAGTGCAAGGACAGGAATAACCCGAGGCCTAATTCAAATGATAGCAGCAGAAGTTCTCACCTACCTGTTCATCCACACGTTTCTCATCCAAGCACAAGTGATCAAGGTTCTGAAGCATTCAAATCATGTAGCCCTCAGAACATCTCAGACTCAGCTGTTGGCAAGGATCCACTGCCTGTAAAACTCAAGCGTCCTGTTGGTATACAATCCCCATTACCTCCACGGGAGTTTTCACTTGACATGGAGGATTTGGACATACCATGGAGTGATCTTGTTTTAAAAGAGAGAATTGGATCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCAGATGTTGCTGTTAAGATTTTGATGGAACAAGATTTTCATGCTGAACGATTCAAGGAATTTCTGAGGGAGGTTGCAATAATGAAACGATTGCGTCATCCAAACATTGTTTTATTTATGGGTGCAGTCACTCAGCCTCCGAATTTATCCATTGTCACAGAATATTTATCCAGGGGTAGTTTATACAGGCTCTTACACAGACCTGGTGCCAAAGAGGTGCTGGATGAGAGGCGTAGGCTTAGTATGGCTTATGATGTGGCAAAGGGAATGAATTATCTTCATAAACGTAATCCCCCAATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTCGTTGACAAGAAATACACAGTCAAGGTTTGTGATTTTGGGCTCTCTCGTTTAAAGGCCAATACATTTCTCTCATCTAAGTCGGCTGCCGGGACTCCTGAATGGATGGCTCCGGAAGTTCTTCGTGACGAGCCATCAAATGAGAAGTCAGATGTTTACAGCTTTGGCGTAATCTTGTGGGAGCTTGCAACCCTACAACAGCCATGGGGTAATTTGAATCCAGCACAGGTTGTAGCGGCTGTTGGCTTTAAGAGGAAAAGGCTTGAGATTCCACATGATTTGAATCCCCACGTAGCTGCATTAATTGAGGCTTGTTGGGCCGATGAGCCTTGGAAGCGTCCTTCATTTTCAAGTATTATGGATTCTTTGAGAACATTGATCAAAGCCCCTACATCTCAACCTGGTCATCCGAACATGCCATTACTTACATAA 2508 0.4821 MEMPARRSNYTLLSQVPDDHFSGSGGGGAGGGSTAPSSSGDGKNSRGGKFENRGAFDWELVGDQRATNRIGNVHSSIGLQRQSSGSSYGESSLSGGGGDFYAPTLSTAAASDVDGFGYYHEDGFRVGELRTRLPEASGRSAGGGGGGGGGGSSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPAPDESGMRSTSSAEAVSHRFWVNGCLSYSEKVPDGFYLIYGMDSYVWTVCTDLQENGRIPSVDTLKSVDPGIDSSLEVVLVDRRSDPTLKDLLSRVHSISCSSITPTEVVDQLSKLVCSCMGGSASIGEDDFFSVWRDCSNDLKDCLGSVVVPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDAASCLVRFGLEREYLVDFIGKPGSLSEPDSVLNGPSSISFSSPLRFPRHKAAEPTIDFRSLAQQYFSDCQSLELVFENSSAEQFDGKCKDRNNPRPNSNDSSRSSHLPVHPHVSHPSTSDQGSEAFKSCSPQNISDSAVGKDPLPVKLKRPVGIQSPLPPREFSLDMEDLDIPWSDLVLKERIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRPGAKEVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKRKRLEIPHDLNPHVAALIEACWADEPWKRPSFSSIMDSLRTLIKAPTSQPGHPNMPLLT 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121518g00005 835 ProSiteProfiles Protein kinase domain profile. 561 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121518g00005 835 CDD STKc_MAP3K-like 567 815 - -
Stsc121518g00005 835 Pfam Protein tyrosine and serine/threonine kinase 562 815 IPR001245 GO:0004672|GO:0006468
Stsc121518g00005 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 682 694 IPR008271 GO:0004672|GO:0006468
Stsc121518g00005 835 Gene3D Phosphorylase Kinase; domain 1 554 639 - -
Stsc121518g00005 835 MobiDBLite consensus disorder prediction 468 526 - -
Stsc121518g00005 835 MobiDBLite consensus disorder prediction 135 160 - -
Stsc121518g00005 835 SMART serkin_6 561 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121518g00005 835 PRINTS Tyrosine kinase catalytic domain signature 635 648 IPR001245 GO:0004672|GO:0006468
Stsc121518g00005 835 PRINTS Tyrosine kinase catalytic domain signature 676 694 IPR001245 GO:0004672|GO:0006468
Stsc121518g00005 835 PRINTS Tyrosine kinase catalytic domain signature 786 808 IPR001245 GO:0004672|GO:0006468
Stsc121518g00005 835 PRINTS Tyrosine kinase catalytic domain signature 723 733 IPR001245 GO:0004672|GO:0006468
Stsc121518g00005 835 PRINTS Tyrosine kinase catalytic domain signature 742 764 IPR001245 GO:0004672|GO:0006468
Stsc121518g00005 835 SUPERFAMILY Protein kinase-like (PK-like) 539 814 IPR011009 -
Stsc121518g00005 835 MobiDBLite consensus disorder prediction 31 45 - -
Stsc121518g00005 835 MobiDBLite consensus disorder prediction 481 521 - -
Stsc121518g00005 835 ProSitePatterns Protein kinases ATP-binding region signature. 567 588 IPR017441 GO:0005524
Stsc121518g00005 835 FunFam Serine/threonine-protein kinase CTR1 640 825 - -
Stsc121518g00005 835 FunFam Serine/threonine-protein kinase isoform 1 551 639 - -
Stsc121518g00005 835 Pfam Ethylene-responsive protein kinase Le-CTR1 204 409 - -
Stsc121518g00005 835 Gene3D Transferase(Phosphotransferase) domain 1 640 827 - -
Stsc121518g00005 835 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 169 820 - -
Stsc121518g00005 835 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121518g00005 Stsc-Chr121518 22917 29757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121518g00005 1 831 MAP Kinase Kinase Kinase AT5G03730 66.156 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc121518g00005 PK_Tyr_Ser-Thr 1.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121518g00005 K14510 - gmx:100800648 1300.03