Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121518g00004 ATGGAGTTTTCAAGGCTCGTGTTGCCCCGGAATTTCAAGCACAACAATTTCTCCAGTTTTGTTCGCCAGCTGAATACTTACGGATTCCGCAAGATTGACACTGACAAGTGGGAGTTTTTCAATGAATATTTCCAGCGAGGGAAGAAGCATTTACTGAAGAACATCCAACGGCGCAGGTCAACTCAATCGCAGCAGGTTGGTAGCTACATTGGGCCTTCTACTGATGCAGGGAGACCTGGACTCGAGGTTGAAATAGAGCTACTGAGGAAGGAGAGAAGTATATTAATGCAGGAGGTTGTTGATTTACAGCAACAACAGCGACGAACAGTTCACCATGCAGGCGAAGTGAATCAGAGGCTAGAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCCTTCTTGGCCAAGCTATTTCAGAACCCAACCTTCTTGGCTCGCCTTAGGGATAAGAAGGAACAAAGAGAGATAGAATCTCCACGAGCGAGAAGGAAGTTTATCAGGCATCAACATGAAGCAGGCACATCCGAAACTCCCAAAGGTCAGGACTTGGCAAGAGAAATTTATGCTGGTGCAGAAAATCCAACTTCACAATTAGACAAAATCGCATCGGATGAATTGGGCGCGTTGCACGAGGCCATGCCAACTTTAGGAATTGTTGGAGAAGGATCATCAAGCTATGGACTTGAAGATCCTCTTTCCAGAGGGAAAAATGTCTTCAACCCAAGTCAAGATGTCCTTTCAGAATATTTTGTTTCCTTCCCGGATGATTTGTCAAAGGAAAGAGAGTTCCCTGTGTTCTCCCCTGTTGGAACTGAAGGCATCATCAAACAAGATGATGTATGGGACCCTACCTTCAACACTAGTGTTGCTGCTTCAAGTTGTGGGAATGAGCTGTGGGGCAATCCTGTTAGCCATGTAGTACCGGAATTCGGAGGCACAAGTGGTGTGTCGGACATATGGGATATCGGCTCAGGAAGTTTAGGTATCGATAAGTGGCCAGCTGATGAATCTCCAACGGAGGAAAAGGAGAGTCAAGCTGGCCAGCCAAAAGATGATAGAACTTAA 1065 0.4582 MEFSRLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEYFQRGKKHLLKNIQRRRSTQSQQVGSYIGPSTDAGRPGLEVEIELLRKERSILMQEVVDLQQQQRRTVHHAGEVNQRLESAEQRQKQMVSFLAKLFQNPTFLARLRDKKEQREIESPRARRKFIRHQHEAGTSETPKGQDLAREIYAGAENPTSQLDKIASDELGALHEAMPTLGIVGEGSSSYGLEDPLSRGKNVFNPSQDVLSEYFVSFPDDLSKEREFPVFSPVGTEGIIKQDDVWDPTFNTSVAASSCGNELWGNPVSHVVPEFGGTSGVSDIWDIGSGSLGIDKWPADESPTEEKESQAGQPKDDRT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121518g00004 354 Coils Coil 85 105 - -
Stsc121518g00004 354 SUPERFAMILY "Winged helix" DNA-binding domain 2 58 IPR036390 -
Stsc121518g00004 354 Gene3D - 1 59 IPR036388 -
Stsc121518g00004 354 PRINTS Heat shock factor (HSF) domain signature 20 32 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121518g00004 354 PRINTS Heat shock factor (HSF) domain signature 7 19 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121518g00004 354 SMART hsfneu3 2 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121518g00004 354 FunFam Heat stress transcription factor B-4 1 59 - -
Stsc121518g00004 354 MobiDBLite consensus disorder prediction 327 354 - -
Stsc121518g00004 354 MobiDBLite consensus disorder prediction 334 354 - -
Stsc121518g00004 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 190 IPR027725 -
Stsc121518g00004 354 Pfam HSF-type DNA-binding 2 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc121518g00004 354 ProSitePatterns HSF-type DNA-binding domain signature. 8 32 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121518g00004 Stsc-Chr121518 18364 21925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121518g00004 1 311 HSF AT5G03720 46.226 4.69e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc121518g00004 HSF_DNA-bind 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121518g00004 K09419 - gmx:100807323 441.039