Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121518g00002 ATGAGAATGGAGAGTTCACGTAGACCCTTCGATAGATCGAGAGAGCCAGGGCCTAAGAAGCCTCGATTAATGGAAGAACCGAATCAGAGACCGTTTCCTCAGCGACAATTGGCTTCGGGGATTACGACGATGTCGTCCACGAGGTTCAGAGCAAACGACAGGGACTCGGAAAGCAGCGAATTCGGCCGAGGCGGTGGCGGTTGCCAGCCTCAGCCGCTGCCGCAGCACCATGAGCTGGTGAATCAGTACAAGACAGCTCTTGCTGAGCTTACTTTCAATTCGAAACCAATCATTACCAATTTGACTATAATTGCAGGGGAGAATCAATCGGCGGCGAAGGCGATCGCCGCCACTGTTTGTGCTAACATTCTAGAGGTTCCTACCGATCAAAAGCTGCCATCTCTTTATCTCTTGGACAGTATCGTGAAGAACATTGGGCGGGATTATATAAAGTACTTTGCTGCCAAACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGAACCTGCTGTCCATCAAAGTATGAGACATCTGTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGCTATTGAGAAGGAACTGGGCTTTACTCCACCAGTCAATGGTTCAGCTTCCTCATCTGCTACCATCAGGAGTGATTCACAGTCCCCACGTCCACCTCATGGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGATTAAAGGAGTTGATGAAATTACTGGAGCATTTGCAAACTCTAATGAGGACCCAGAGAGGCCAGATAGAACCTTGGGTGTTGCGCGGCCATGGTTGGATCCTAGTGTTAGTACCTCAAGAGATGCATTTAATGATTCTGTTTTGGAAAAGAGTGTTGGTGTATCCTATGGAGGCCATGAATATGGTTCTGATCTTTCACGGAATTTGGGCTCAGGTATGGGCAGAGCTGGTGACAAAACTTGGTTTAAAGCAGGTGGAGCTGCGGGAACCATATCTGGCCAAAAAAATGGTTTCAGTGCGAAGCATAGTTTTTCAAATACTGAAGCACCAAAGTATAATCAGCCAACACAAAACATAAATAGCATTCGGAGCAGCATCATGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATATGGGATGAGATGAATTCTAGATCAACTGGTCATGGAGTAGCAAATGTTTCTAACAACTTGAGCAAAGATTCTTGGCCGGCGGATGATGAGAACTTTGAAGTTGAAGATCATGTCCAAATAAGAAATCCATATGGGGCAAATCTTGATAGAGAATTGACCACTCTAAGCAATGAAAAGAAACAGTTTTCATCATTTCAGCGTCATCCATCAGTGTCGTGGCAACTACAAGAGCAGCACTCACTTGAAGAGTTGAATGAAAAGCCAGGTCGCTCAGAAGGATTTATGTCCTCTCTTAGTGGTTTGCCAGCCAATACAAATTCTGTTGTCAGGATGGGGAATCGGTCTTTCTTGCCAAATGCAACAACAGGACTGCCAGGAATTGTGGGACAACACGGTCATTCAATTGGAGTCGAATCCCCTTCTGGGCAGTCACCCTTGTGGCAACAGTCTTCACCACCACCAGTTGGTAACTTGCGAAGACCACATCAAAAGGATTTGCCAGGTTCATTTCCTGCGACGACTTCCTTTCAGTCAAGGCATCAGCAGCAGCTTCGCCTGTCTCACAGTGATGTTACTGAGAAACCTCCCCTATCTAGAGTTCCACTAGCCAAAGAGAGCCTTGAACAGTCAACCACAGCTAGTTTGGAAGCTGCTACTCTAAAGGGTGGAACGTTATCCAGCATGTCCAATGCAAGTCGCCTGGATTCGAGGAATCATCCGTCTCAATTAGGGGTCCGGCCTCCTCGCTCTGCTGGGCCTTCCCCTGCCACATTAATTTCTTCAGTGTCTGCCATCTTAGCACCATCTTCATTAGGTCCTTTAAGTAATAGTTTATCTGCTTTGCCAAAAGCACCAGAAAGAAAGGCTGGGCAATTGACAAGGGCATCAACTCTACCACCGGCTTCCTCTGATATCAGCGGTGCCTCAGCTCAGACAACAAGTTCCAGCAGTAATACAAATCCAATTGCAAATCTTCTAAGCTCTTTAGTTGCGAAGGGTTTGATATCGGCAGAAAAAGAATCACAAACTAAGGTGACATCTGAGTTCCCGGCTCAGTTGGAAGATCAAAGAGACAGCATTACCACCAGTAGCTCTTTGCCTGTTGCTTCAGTGTCTGGTTCTGAAGCTGTCCCGGTACCTTCTGCCACAGATGATGTAAATGATACTGCAAAATCCCCAATATCATTGTCTGAAACAACCAGCACAGAAATCAGGAACCTCATTGGCTTTGAGTTTAAGCCAGATGTAATCCGAGAAGTGCACCCACCTGTCATTAAAGGATTATTTGACGATNNNNNNNNNNTCTGTGGCTGTAGGCTTAAATTCCAACAACAGTTAAATAGACACTTGGATTGGCATGCCACAAGGGAGAAAAATGATCTAACTAGGGCATCAAGAGGATGGTTTCCAAAGTCAATTGACTGCGTTGTTAGCAAGGTTGAATGTTCATCCGAGTCTGAGTTCGCTGAATCTGTTGATACACACAGCAAGGAGACAAGAAGCACTCAAGAGGATTCAATGGTTCAAGCAGATGAAAGCCAATGCTTGTGTGTGTTGTGTGGTGAGGTATTTGAAGATTTCTACTGTCAAGAAAGCGGTGAGTGGATGTTCAAAGGGGCGGTAGACATGGCTAACTCAGACAGTGAGATGGGAAATAGAAATACGAGTACTTCAAGGGGTCCCATTATTCATGCAAGATGCTTTCCGGGGAACTCAATATCCAGTGTCGTCAAGATGGAACAAGATTAA 2904 0.457 MRMESSRRPFDRSREPGPKKPRLMEEPNQRPFPQRQLASGITTMSSTRFRANDRDSESSEFGRGGGGCQPQPLPQHHELVNQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPTDQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVEPAVHQSMRHLFGTWKGVFPPQTLQAIEKELGFTPPVNGSASSSATIRSDSQSPRPPHGIHVNPKYLERQRLQQSSRIKGVDEITGAFANSNEDPERPDRTLGVARPWLDPSVSTSRDAFNDSVLEKSVGVSYGGHEYGSDLSRNLGSGMGRAGDKTWFKAGGAAGTISGQKNGFSAKHSFSNTEAPKYNQPTQNINSIRSSIMSSSWKNSEEEEYIWDEMNSRSTGHGVANVSNNLSKDSWPADDENFEVEDHVQIRNPYGANLDRELTTLSNEKKQFSSFQRHPSVSWQLQEQHSLEELNEKPGRSEGFMSSLSGLPANTNSVVRMGNRSFLPNATTGLPGIVGQHGHSIGVESPSGQSPLWQQSSPPPVGNLRRPHQKDLPGSFPATTSFQSRHQQQLRLSHSDVTEKPPLSRVPLAKESLEQSTTASLEAATLKGGTLSSMSNASRLDSRNHPSQLGVRPPRSAGPSPATLISSVSAILAPSSLGPLSNSLSALPKAPERKAGQLTRASTLPPASSDISGASAQTTSSSSNTNPIANLLSSLVAKGLISAEKESQTKVTSEFPAQLEDQRDSITTSSSLPVASVSGSEAVPVPSATDDVNDTAKSPISLSETTSTEIRNLIGFEFKPDVIREVHPPVIKGLFDDXXXXCGCRLKFQQQLNRHLDWHATREKNDLTRASRGWFPKSIDCVVSKVECSSESEFAESVDTHSKETRSTQEDSMVQADESQCLCVLCGEVFEDFYCQESGEWMFKGAVDMANSDSEMGNRNTSTSRGPIIHARCFPGNSISSVVKMEQD 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 731 756 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 199 275 - -
Stsc121518g00002 967 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Stsc121518g00002 967 SUPERFAMILY ENTH/VHS domain 74 205 IPR008942 -
Stsc121518g00002 967 CDD CID_Pcf11 80 196 IPR047415 -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 521 541 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 463 641 - -
Stsc121518g00002 967 Gene3D - 73 200 IPR008942 -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 589 624 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 482 505 - -
Stsc121518g00002 967 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 27 957 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc121518g00002 967 Pfam CID domain 84 194 IPR006569 -
Stsc121518g00002 967 SMART 558neu5 78 200 IPR006569 -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 1 26 - -
Stsc121518g00002 967 FunFam polyadenylation and cleavage factor homolog 4 73 200 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 731 779 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 32 49 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 1 77 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 204 221 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 659 706 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 553 574 - -
Stsc121518g00002 967 MobiDBLite consensus disorder prediction 680 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121518g00002 Stsc-Chr121518 8758 15048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121518g00002 793 954 C2H2 Transcription Factor Family AT4G04885 36.905 1.33e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121518g00002 K14400 - gmx:100807857 1150.96