Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121509g00004 ATGGAGACCCGCGCCGCCGCAAAGAGAAGAGCCACTGCCCCCACCCAACTTGAGATTCAACACCTCAAGAAGCAGCGTGTTGTCTTGGCTGAACTCCCCAACATCCCCAACTTCATTCAATCCCCCACCACCAACGAGAAGAAACCCCATTCCACAGTTGAAGCAAAATCGCTCAAGTTCCAAGATCCCAATCTTGTCGACGAACCTTATGTTTCCGACATCCATAGCTATCTTCGTTCAATGGAGATGGAGAAGAAGAGAAGGCCAATGGTTGATTACATTCAAAAAGTTCAGAAAGATGTTACCGCTAACATGAGAGGTGTATTGGTGGATTGGTTAGTAGAGGTTGCAGACGAGTACAAGCTTCTCCCTGAGACTCTTTTTCTCTCTGTTTCTTACATTGACAGATTCCTCTCTGTAAACCCTGTTGTTCGATCCAAGTTTCAGTTGCTCGGTGTTTCTTCCATGCTCGTTGCATCGAAGTATGAAGAAATTAACCCTCCGAATGTGAAGGAATTCTGCTACATCACTGAAGATACATACACGAAATCACAGGTTGTACAGATGGAAGCTGACATACTCAAATCCCTAAAGTTTGAAATGGGGAACCCTACTGTTAAGACCTTCCTATCTATGTATTCAGGGATTGCTTCTCAAGATAAGAAAATTAAGAATTCTCAGATTGAATTTTTGAGCTGCTATCTTGCTGAGCTAAGCCTATTGGATTATAGTTGTGTGAAATTCTTGCCTTCTATGATAGCTGCTTCGGTTATATTTCTTGCCAGATTTATTATCTGGCCTGTGGTGCATCCTTGGACTTCATCCTTGCACGAATGCTCAGGTTATACATCGCTTGAACTTAAAGAATGTGTTCTGATCTTACATGACTTGTATATGTCGAGAAGGGCTGCGTCTTTATCAGCTGTTCGGGAGAAATACAAGCAGCACAAGTTCAAATGCGTGGCAAATCTGTCTTCCTCACCAAGTATACCAAGTTCTTACTTTAAATAA 1011 0.4263 METRAAAKRRATAPTQLEIQHLKKQRVVLAELPNIPNFIQSPTTNEKKPHSTVEAKSLKFQDPNLVDEPYVSDIHSYLRSMEMEKKRRPMVDYIQKVQKDVTANMRGVLVDWLVEVADEYKLLPETLFLSVSYIDRFLSVNPVVRSKFQLLGVSSMLVASKYEEINPPNVKEFCYITEDTYTKSQVVQMEADILKSLKFEMGNPTVKTFLSMYSGIASQDKKIKNSQIEFLSCYLAELSLLDYSCVKFLPSMIAASVIFLARFIIWPVVHPWTSSLHECSGYTSLELKECVLILHDLYMSRRAASLSAVREKYKQHKFKCVANLSSSPSIPSSYFK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121509g00004 336 ProSitePatterns Cyclins signature. 106 137 IPR006671 -
Stsc121509g00004 336 SMART Cyclin_C_2 204 327 IPR004367 -
Stsc121509g00004 336 CDD CYCLIN_AtCycA-like_rpt2 204 318 - -
Stsc121509g00004 336 SUPERFAMILY Cyclin-like 180 331 IPR036915 -
Stsc121509g00004 336 Gene3D - 73 323 - -
Stsc121509g00004 336 FunFam Mitotic cyclin 6 89 189 - -
Stsc121509g00004 336 SMART cyclin_7 208 296 IPR013763 -
Stsc121509g00004 336 SMART cyclin_7 111 195 IPR013763 -
Stsc121509g00004 336 Pfam Cyclin, N-terminal domain 73 201 IPR006671 -
Stsc121509g00004 336 FunFam Cyclin A1 191 323 - -
Stsc121509g00004 336 PIRSF Cyclin_A_B_D_E 2 334 IPR046965 GO:0016538|GO:0044772
Stsc121509g00004 336 PANTHER CYCLINS 52 321 IPR039361 -
Stsc121509g00004 336 Pfam Cyclin, C-terminal domain 204 326 IPR004367 -
Stsc121509g00004 336 Gene3D - 87 202 - -
Stsc121509g00004 336 SUPERFAMILY Cyclin-like 66 201 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121509g00004 Stsc-Chr121509 15630 17583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121509g00004 3 336 Core Cell Cycle Gene Families AT5G43080 54.913 4.80e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121509g00004 K06627 - gmx:547779 420.624