Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121509g00003 ATGGAGACTCGTGCCGCCGCAAAGAGGAGGGCTATGGCTGCAAACCTCACTGAGAATCAACCCCTCAAAAGGAAGCGCGTTGTGTTAGGTGAACTTCCCAATTTCACCACAGAGAATTTGAGTCCCCAGAAACCCAAACCCAAATCCAAATCCCTCAACAATGCCAAGCCCAAGAAAGCTTCTGTCATTGACAAGAATATCAAGCCTGTTAAGGTCAAGGAGGAGAAGGAGAATGTGCTTGTTGATGAAGATGACGAGCTCAATAATGTTGACATTGTTGCCTCTGATATCTATATGTACCTTCGCAAGATGGAGCTGGAGAAGAATAGAAGGCCGAGAGTTGATTACCTTGAGAGGATTCAGAGAGATGTAACTGCGAACATGAGAGGGATTTTGGTGGATTGGCTGGTGGAAGTTGCAGAGGAATACAAGCTTCTCTCTGACACTCTCTATCTTTCGATTTCTTACATTGATAGATACCTCTCTATGAACCGTATCACCAAGCCTTATCTTCAGTTGCTGGGTGTTTCAGCAATGCTCATTGCTGCGAAATATGAAGAAATTAATCCCCCTCATGTGGAGGAGTTCTGCTTTATCACTGATAACACATACAACAAGTCAGAGGTAGTGGAGATGGAAGCTGAAATCCTTAAGTCCTTGAATTTTGAAATGGGTAGCCCAACTATCAAGACCTTTTTAAGGAGGTTTAATGATATTGCTTGTGAGGATCAAAAGGGTCAAAAATTGCAGTTTGAGTTTCTGTGTTATTACCTTGCTGAGCTAAGCTTGTTGGAGTATGCTTGTTTGAAGTTCTTGCCTTCTTTGGTGGCTGCTGCTGTTATATTTCTTGCTAGATTTATCCTATCGCCTAAATTGAATCCCTGGACCTTAACCCTTTATGATCGCACTGGATATGATTCACTTCAGTTGAAAGACTCTGTTCTGATCTTACATGACTTGTATTTGGGAAGAAGGGGAGCATCCTTCCAAGCTATTAGGGAGAAATACAAGCAGCACAAGTTTAAGTATGTGGCAAATTTGCCTTCCCCGCCTCAGATACCAGATTCAAGCTTTGAAGATGAATTTTATGAAGAAAACTTTTATGATGACTGA 1113 0.4205 METRAAAKRRAMAANLTENQPLKRKRVVLGELPNFTTENLSPQKPKPKSKSLNNAKPKKASVIDKNIKPVKVKEEKENVLVDEDDELNNVDIVASDIYMYLRKMELEKNRRPRVDYLERIQRDVTANMRGILVDWLVEVAEEYKLLSDTLYLSISYIDRYLSMNRITKPYLQLLGVSAMLIAAKYEEINPPHVEEFCFITDNTYNKSEVVEMEAEILKSLNFEMGSPTIKTFLRRFNDIACEDQKGQKLQFEFLCYYLAELSLLEYACLKFLPSLVAAAVIFLARFILSPKLNPWTLTLYDRTGYDSLQLKDSVLILHDLYLGRRGASFQAIREKYKQHKFKYVANLPSPPQIPDSSFEDEFYEENFYDD 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121509g00003 370 MobiDBLite consensus disorder prediction 33 59 - -
Stsc121509g00003 370 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121509g00003 370 SUPERFAMILY Cyclin-like 227 352 IPR036915 -
Stsc121509g00003 370 PIRSF Cyclin_A_B_D_E 2 362 IPR046965 GO:0016538|GO:0044772
Stsc121509g00003 370 MobiDBLite consensus disorder prediction 34 56 - -
Stsc121509g00003 370 SMART Cyclin_C_2 227 350 IPR004367 -
Stsc121509g00003 370 Gene3D - 112 225 - -
Stsc121509g00003 370 SMART cyclin_7 231 319 IPR013763 -
Stsc121509g00003 370 SMART cyclin_7 134 218 IPR013763 -
Stsc121509g00003 370 Pfam Cyclin, N-terminal domain 96 224 IPR006671 -
Stsc121509g00003 370 PANTHER CYCLINS 69 338 IPR039361 -
Stsc121509g00003 370 FunFam Mitotic cyclin 6 112 212 - -
Stsc121509g00003 370 ProSitePatterns Cyclins signature. 129 160 IPR006671 -
Stsc121509g00003 370 Pfam Cyclin, C-terminal domain 227 349 IPR004367 -
Stsc121509g00003 370 SUPERFAMILY Cyclin-like 90 224 IPR036915 -
Stsc121509g00003 370 FunFam Cyclin A1 214 346 - -
Stsc121509g00003 370 Gene3D - 96 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121509g00003 Stsc-Chr121509 9530 11348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121509g00003 3 360 Core Cell Cycle Gene Families AT1G47230 52.925 2.39e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121509g00003 K06627 - pop:7472680 401.364