Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121509g00002 ATGGGGAGAGTGAAGCTTCCCATCAAGAAGATTGAGAACACAACAAACAGGCAAGTCACATTCTCCAAGAGGAGGAATGGCCTCGTGAAGAAAGCTTACGAGCTTTCTGTTCTCTGTGATGTTCATGTTGCTCTCATCATGTTCTCCCCTTCTGGCAGGCCCACTCTCTTCTCCTCCAACACAAGCATTGAAGAAATTCTAGAGCGATATATTAACCTTCCACCACAAGAACGCAAAAACCCGGTGAATACAGATTCCCAGCTTGAGGAGATTCAAAGAGAGTATTTTATTTGCAAGTCTCAGTTAGAAGAAATGGAGAAACGGCTAAGGATATTTGAATGTAATCCGTGTGAGATCACTACACTTTGTGAGGCTGAATATCGCCAGCATGTCCTTCAGGAAACTCTAAAGCAAGTGCAGTTGCGAAAATGTGCCTTGGAGGAAGAGTTTAATTTTGGTGCATCTCAACAGGCACATCTTGCAAAAACTGTAGATGTAAATGGATTATTTGTTGGTGGGACATCAAAGAATGCAGTAGAGTGGCTCCCACAGGAACAGGGAGATCCAAATGTTCATATTCTCAGCTTTGGAGATGCATATGCTCCTGCTCCAGCTCCTCTTGGGGATCAACAATCACATAGTGCTGCTATTGACATGTTAGCCGCAAGTTCTACAAACACCATTCAACTTCAAATGAATCCAAAGAATAATAGTTCAGAAGCATGCATACTAGCTCCTGAGTTTGGACAAGTTACAGATATCAGTTCTTCCTCTTGGGAGCAACTCCATCATTTAGGTACTAATCACTATCTATTTGTTTCATCAGATTATCACTTTATGGAGAAACATGGGTTTGAATTTGATCTTTGGAGCAATTTTGATTTGTTAGCAGGGAATGGATCTTTGTCAGTGCCAGAGGCAAGGGTGGAAGGACAACTAATTGAACAATATCTTTCTCAGTTTCCTTCTTTGGATATCTTGGTATCCAATCAACATCATCAAACATGA 1008 0.4137 MGRVKLPIKKIENTTNRQVTFSKRRNGLVKKAYELSVLCDVHVALIMFSPSGRPTLFSSNTSIEEILERYINLPPQERKNPVNTDSQLEEIQREYFICKSQLEEMEKRLRIFECNPCEITTLCEAEYRQHVLQETLKQVQLRKCALEEEFNFGASQQAHLAKTVDVNGLFVGGTSKNAVEWLPQEQGDPNVHILSFGDAYAPAPAPLGDQQSHSAAIDMLAASSTNTIQLQMNPKNNSSEACILAPEFGQVTDISSSSWEQLHHLGTNHYLFVSSDYHFMEKHGFEFDLWSNFDLLAGNGSLSVPEARVEGQLIEQYLSQFPSLDILVSNQHHQT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121509g00002 335 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Stsc121509g00002 335 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc121509g00002 335 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc121509g00002 335 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc121509g00002 335 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc121509g00002 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Stsc121509g00002 335 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Stsc121509g00002 335 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Stsc121509g00002 335 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc121509g00002 335 Coils Coil 88 108 - -
Stsc121509g00002 335 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 204 - -
Stsc121509g00002 335 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121509g00002 Stsc-Chr121509 6644 8790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121509g00002 1 194 Type I MADS-box Gene Family AT1G22130 40.517 1.63e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc121509g00002 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121509g00002 - - tpra:123918189 322.398