Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121509g00001 ATGTGCTCCGGCGAGTCAACTATGAACGGGGCTCAGTCGCGAGAGGATGAGTCGAAAGAAGACGACAGGGATGCAGAAGCAAATCGCCTTCTGCATCATCATCATCATCAATCGACGTCGTCGGTGGACGACGAAGAGGTGGCCTACGAGGCAGGGGAGAAGATCCAGGTGGTAGATTTCGACTTGGTGGACGGCGACGAAGATTCAGGTGTTCCCCCTCCGTTCTCGTGGAAGAAGCTGTGGCTGTTCACTGGTCCCGGGTTCCTGATGAGCATAGCGTTCTTGGATCCGGGGAATCTCGAAGGGGATCTCCAGGCAGGAGCCATCGCAGGGTACACGCTTCTGTGGCTGCTGATGTGGGCAACCTTCATGGGACTCTTGATACAACTTCTGTCGGCGAGGATTGGGGTGGCCACTGGGCGCCACCTGGCAGAGCTGTGTAGGGAGGATGCCATCGCTATCCAAATTCTTAGCCGCGGGGTTTTCCCACTCTGGCTTGGAGTTTTGATTACCGCTTCTGATTGTTTTGTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCTACTATGGCTCTTTCTTTTGCCTGGATGTTTGCTGACGCGAAACCTAGTGGGAACGAACTTTTAAAGGGTATTTTGCTCCCAAGACTTAGCTCAAAAACAATTCGCCAAGCTGTCGGTGTTGTTGGCTGTGTCATAATGCCGCACAATGTATTCTTGCATTCTGCTTTAGTGCAGTCAAGGAAGATAGATCCCCAGAAGAAAGGCCGGGTACAGGAGGCTATCAACTACTATACAATTGAGTCAACAGTTGCACTTGCAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGATTTTATGGCTCAAAGCAGGCTGATAGCATTGGATTGGTGAATGCAGGGCAGTACCTTGAGGAAAAGTATGGAGGAGGAATGTTCCCCATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGACAAAGTAGCACCATCACAGGCACATATGCTGGCCAATTCATAATGGGTGGTTTCCTCAACCTGGGCTTAAAGAAATGGTTGAGAGCATTGATCACTCGTAGTTTTGCAATTGTGCCAACTATAGTCGTAGCTATTGTTTTTAATACATCAGAAGCCTCATTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCCATGCAAATTCCCTTTGCACTGATTCCCCTCCTGACTTTGGTCTCCAAGGAGCATATCATGGGGACCTTTAGGATTGGGCCTCTTCTTGAGAGGGTAGCATGGACAATTGCTGCACTTATAATGGTAATTAATGGGTATCTCTTGTTAGATTTCTTCCTGTCTGAGGTGAAGGGCTTGCTGCTTGGTTTTGTAGTATGTTCCTGCACAGCTGCCTATGTTGCATTCATTGCATATTTGATTTCTCAGAGCGGTGCACTTCCACACACTTGGGTTAATAGAATTCCCAAGGGGTTTTCTCTTCTCCAAATTGAATCAACAAATTCACACAATGTTAAAAATCCAGAAAATAGTACTGCAAACTCCAGCTAA 1593 0.4683 MCSGESTMNGAQSREDESKEDDRDAEANRLLHHHHHQSTSSVDDEEVAYEAGEKIQVVDFDLVDGDEDSGVPPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYTLLWLLMWATFMGLLIQLLSARIGVATGRHLAELCREDAIAIQILSRGVFPLWLGVLITASDCFVFLFLENYGVRKLEAAFAVLIATMALSFAWMFADAKPSGNELLKGILLPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPQKKGRVQEAINYYTIESTVALAVSFMINLFVTTVFAKGFYGSKQADSIGLVNAGQYLEEKYGGGMFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLGLKKWLRALITRSFAIVPTIVVAIVFNTSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEHIMGTFRIGPLLERVAWTIAALIMVINGYLLLDFFLSEVKGLLLGFVVCSCTAAYVAFIAYLISQSGALPHTWVNRIPKGFSLLQIESTNSHNVKNPENSTANSS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121509g00001 530 MobiDBLite consensus disorder prediction 12 45 - -
Stsc121509g00001 530 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 151 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 NCBIfam Nramp family divalent metal transporter 164 426 - -
Stsc121509g00001 530 MobiDBLite consensus disorder prediction 1 45 - -
Stsc121509g00001 530 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 PRINTS Natural resistance-associated macrophage protein signature 235 258 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 PRINTS Natural resistance-associated macrophage protein signature 404 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 Pfam Natural resistance-associated macrophage protein 151 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 Pfam Natural resistance-associated macrophage protein 101 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc121509g00001 530 Hamap Divalent metal cation transporter MntH [mntH]. 65 460 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121509g00001 Stsc-Chr121509 868 3953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121509g00001 15 491 Inorganic Solute Cotransporters AT1G47240 73.913 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121509g00001 K21398 - qsa:O6P43_018984 804.283