Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121498g00003 ATGAAAGAAGTTAGGTTTTCATGGTTCATTCTTGTGCCATTGTTCATCACATTCTTGAACCATGCAAACTCCCAGTCTCAGCTTCTTCATGATCAAGAACACCAAGTCCTAATGAGGATCAAGGATTATTTTCATGACCCTACTTTTCTCAATCATTGGACCCCATCAAACTCTTCTTATTATTGTTCTTGGCCTGAGATCTCTTGCACCAATGGTTCTGTCACAGGACTAACTTTGGTTAATCTTAACATCATTCAAACAGTGCCACCTTTCATTTGTGATCTCAAGAACCTCTCACTTGTTGATTTCAGCAACAATTCAGTTCCTGGGGTGTTCCCAAGTTATCTCTATGATTGCTCCAAGCTTGAGTATCTTAATCTTTCTATGAACTTTTTTGTTGGTGAAATACCTCATGATATTGATACTTTGTCCAATTTGAAGTACCTTAACCTTAGTTATACCAATTTCACTGGTACCATTCCTTCCAGTGTTGGAAATTTGAAGGAACTAAGGTTCCTTGCTCTGCAAGATTGCCTGTTCAATGGTTCTCTCCCTGATGAGATTGGAAACTTGTCTAATCTTGAAACATTGGATTTGTCCGGTAACGAATTGCTTCCGCCTTCGAGGTTGCCGTTGAACTGGACAAATTTGAATAAGCTGAAGGTATTTTACATGTTTGAATGCAACCTGTTTGGTGAAATTCCTGAAAGAATTGGAGATATGGTTGCTTTGGAGGAGCTTGATTTGTCGCGGAACGATTTAACCGGAGGAATTCCAAGCAGTTTGTTCTTGCTGAAGAATCTGAGTGTTGTGTACCTTTGGAAGAACAAACTTTCTGGGGAAATACCATCAAAGATTGAAGCATTGAATCTGACCAACATCGCCTTATCACAGAACAGGCTTACAGGGAAAATACCAGAAGATTTTGGAAAGCTCCAAATGTTAATGGAATTCAAATTGAGCATCAATAACCTGTCAGGGGAGATACCACAAAGCATAGGGAGTCTTCCATCTCTGACCGATTTTGTTGTTATTATGAACAATCTATCAGGTACTCTTCCTCCCGAATTCGGCCGCTACTCCAAGCTTCAAAACTTTCAAATTTCATCCAACAATTTTACTGGAATGCTTCCAGAGAATTTATGCTATTATGGTGAATTAATTACATTAACTATTTATAAAAATAGCTTGAATGGTGAGCTGCCAGAGTCACTAGGAAATTGCAGTTCCCTGCAGTACCTGAAAATTTGGAGCAATGACTTTTCTGGTAACATTCCTAGTGGCCTTTGGAAATCTTCCAATTTGGTGAATTTCATGGTAAGCCATAATAGGTTCACTGGTGAGCTCCCGGATAAATTGTCACCGAGCATTGCTCTCTTCGACATAAGTTACAATCAGTTTTCTGGTAGAATTCCGACCGGGGTGTCGTCTTGGACTAATGTGGTAGAGTTTATTGCAAGCAGGAACTACTTCAATGGAACTATTCCTCATGAGCTAACAGAACTTCCCAAGTTAACACAACTTTTGCTTGATCAGAACAATCTCACTGGGACAATTCCTTCAGACATAGCCTCGTGGAACTCTCTAGTTACCCTAAATTTGAGCCATAACCACTTGTATGGGCAAATCCCAGATTCAGTTGGTCAATTACCTGCACTTTTAGAACTTGACCTCTCAGAGAATCAATTCTCTGGCCAAGTCCCTTCTCTTTCTTCAAGACTCACCAATCTCAATCTATCATCCAATCATCTGACTGGGAAAGTTCCAAGTGACTTTCAGAATTCTGCATTTGACACTAGCTTTTTGGATAACCCTGGCCTTTGTGCAGATAAAGCGGAACTGAACATCAAATTGTGCAATTCTGGCTCACAAAGTTCAAGGAAGGACTCATCATCATCTTGGTCCCCTGCTTTGATCATAGCCCTTGTTTTAGCAGTCTCATTACTCGCTATTGCGGTGTTATTCTTGCTTATCAGACTCATCAAGAAAGGAAAGCGAGTGCTGAATAACTCATGGAAGCTCACTTCATTCCAAAGGCTGAGCTTCACTGAATCAGATATAGTTTCTTCGATGACAGAACATAATATCATTGGCAGTGGAGGATATGGTACAGTTTACCGTGTCAATGTCAATGATTTTGGCTTTGTTGCTGTCAAAAAGATTTCTGGTAACGGAAGGCTAGACCGGAAGCTTGAGAATTCATTTCTCTCTGAAGTTAAGATATTAAGCAGCATTCGACATAGAAACATTGTGAAATTGTTGTGCTGTCCAGTCCAGCATAATCACGTTGCACTGAATTGGCCAAAGAGAATACAAATAGCCATTGGTGTTGCACAAGGATTGAGCTACATGCACCACGATTGCTCCCCGCCCATTGTTCATCGCGATGTGAAAACGAGCAACATACTATTGGATTATCAATTCAATGCAAAAGTTGCTGATTTTGGGCTAGCAAGGATGTTGATCAAGCCAGGGGAACTTGCCACCATGTCCACTGTTGTTGGCTCATTTGGATATCTTGCTCCAGAATACATTCAGACCACAAAAGTCAGTGAAAAGATTGATGTTTTCAGCTTTGGGGTTATCCTATTGGAGCTGACAACAGGTAAAGAAGCTAACTATGGAGATGAACACTCATCTCTTGCAGAATGGGCATGGAAACACTTTCAGTTTGGAAGCAACATAGAAGAGCTGCTTGACAAAGAAATCATGGAACCTGTTTACTTGGATGAGATGTGTCATGTTTTCAAACTTGGGGTGATGTGCACTTCAAAGCTTCCAGATACTAGACCTACCATGAAGGAGGCATTGCAAGCTTTGCTACAAAGTGGAGAATCATATGCTTTTGGAGAGAGGATTAGTGTTGGACACTATGATGCTGTTCCTCTTCTTAGAAACTCAAAAAGTGAGCATAGATTGGATATTGATGGTGACAGCTAG 2940 0.4051 MKEVRFSWFILVPLFITFLNHANSQSQLLHDQEHQVLMRIKDYFHDPTFLNHWTPSNSSYYCSWPEISCTNGSVTGLTLVNLNIIQTVPPFICDLKNLSLVDFSNNSVPGVFPSYLYDCSKLEYLNLSMNFFVGEIPHDIDTLSNLKYLNLSYTNFTGTIPSSVGNLKELRFLALQDCLFNGSLPDEIGNLSNLETLDLSGNELLPPSRLPLNWTNLNKLKVFYMFECNLFGEIPERIGDMVALEELDLSRNDLTGGIPSSLFLLKNLSVVYLWKNKLSGEIPSKIEALNLTNIALSQNRLTGKIPEDFGKLQMLMEFKLSINNLSGEIPQSIGSLPSLTDFVVIMNNLSGTLPPEFGRYSKLQNFQISSNNFTGMLPENLCYYGELITLTIYKNSLNGELPESLGNCSSLQYLKIWSNDFSGNIPSGLWKSSNLVNFMVSHNRFTGELPDKLSPSIALFDISYNQFSGRIPTGVSSWTNVVEFIASRNYFNGTIPHELTELPKLTQLLLDQNNLTGTIPSDIASWNSLVTLNLSHNHLYGQIPDSVGQLPALLELDLSENQFSGQVPSLSSRLTNLNLSSNHLTGKVPSDFQNSAFDTSFLDNPGLCADKAELNIKLCNSGSQSSRKDSSSSWSPALIIALVLAVSLLAIAVLFLLIRLIKKGKRVLNNSWKLTSFQRLSFTESDIVSSMTEHNIIGSGGYGTVYRVNVNDFGFVAVKKISGNGRLDRKLENSFLSEVKILSSIRHRNIVKLLCCPVQHNHVALNWPKRIQIAIGVAQGLSYMHHDCSPPIVHRDVKTSNILLDYQFNAKVADFGLARMLIKPGELATMSTVVGSFGYLAPEYIQTTKVSEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWKHFQFGSNIEELLDKEIMEPVYLDEMCHVFKLGVMCTSKLPDTRPTMKEALQALLQSGESYAFGERISVGHYDAVPLLRNSKSEHRLDIDGDS 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121498g00003 979 SUPERFAMILY RNI-like 290 591 - -
Stsc121498g00003 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 30 189 - -
Stsc121498g00003 979 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 287 - -
Stsc121498g00003 979 Gene3D Ribonuclease Inhibitor 208 341 IPR032675 -
Stsc121498g00003 979 Gene3D Ribonuclease Inhibitor 342 618 IPR032675 -
Stsc121498g00003 979 Pfam Protein kinase domain 693 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121498g00003 979 SMART LRR_typ_2 550 574 IPR003591 -
Stsc121498g00003 979 SMART LRR_typ_2 241 265 IPR003591 -
Stsc121498g00003 979 SMART LRR_typ_2 191 217 IPR003591 -
Stsc121498g00003 979 SMART LRR_typ_2 502 526 IPR003591 -
Stsc121498g00003 979 SMART LRR_typ_2 143 167 IPR003591 -
Stsc121498g00003 979 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Stsc121498g00003 979 SUPERFAMILY Protein kinase-like (PK-like) 685 940 IPR011009 -
Stsc121498g00003 979 Gene3D Transferase(Phosphotransferase) domain 1 673 758 - -
Stsc121498g00003 979 FunFam Receptor-like protein kinase HSL1 isoform A 295 619 - -
Stsc121498g00003 979 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Stsc121498g00003 979 Gene3D Ribonuclease Inhibitor 28 207 IPR032675 -
Stsc121498g00003 979 SMART serkin_6 691 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121498g00003 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Stsc121498g00003 979 Pfam Leucine Rich Repeat 244 262 IPR001611 GO:0005515
Stsc121498g00003 979 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515
Stsc121498g00003 979 Pfam Leucine Rich Repeat 573 594 IPR001611 GO:0005515
Stsc121498g00003 979 Gene3D Transferase(Phosphotransferase) domain 1 759 955 - -
Stsc121498g00003 979 ProSiteProfiles Protein kinase domain profile. 691 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121498g00003 979 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 14 935 - -
Stsc121498g00003 979 Pfam Leucine rich repeat 503 563 IPR001611 GO:0005515
Stsc121498g00003 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 742 954 - -
Stsc121498g00003 979 SUPERFAMILY L domain-like 36 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121498g00003 Stsc-Chr121498 3732 7242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121498g00003 33 964 Receptor kinase-like Gene Family AT5G25930 47.276 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc121498g00003 Pkinase 2.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121498g00003 - - gmx:100798963 1293.49