Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121490g00001 ATGGCCTACGCAGCTATGAAGCCCAGCAAACCAGGCTTGGAGGAGTCACAGGAGCAGATCCACAAGATCAGAATCACCCTCTCCTCCAAGCACGTCAAAAACCTCGAGAAGGTTTGCTCTGACTTGGTTCGTGGTGCCAAGGACAAGCGCCTCAGAGTGAAGGGACCCGTCAGGATGCCCACTAAGGTTCTTCACATCACTACCAGGAAATCCCCTTGTGGTGAAGGAACCAACACCTGGGACCGATTTGAGCTACGTGTGCACAAGAGGGTAATCGACCTTTACAGTTCTCCGGACGTTGTTAAGCAGATTACCTC 317 0.5237 MAYAAMKPSKPGLEESQEQIHKIRITLSSKHVKNLEKVCSDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121490g00001 106 Hamap 30S ribosomal protein S10 [rpsJ]. 20 106 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc121490g00001 106 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 106 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc121490g00001 106 NCBIfam 30S ribosomal protein S10 21 105 IPR005729 GO:0003735|GO:0006412|GO:0015935
Stsc121490g00001 106 SUPERFAMILY Ribosomal protein S10 22 105 IPR036838 -
Stsc121490g00001 106 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc121490g00001 106 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc121490g00001 106 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc121490g00001 106 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc121490g00001 106 Gene3D Ribosomal protein S10 domain 6 106 IPR036838 -
Stsc121490g00001 106 SMART Ribosomal_S10_2 24 106 IPR027486 -
Stsc121490g00001 106 Pfam Ribosomal protein S10p/S20e 24 105 IPR027486 -
Stsc121490g00001 106 FunFam 40S ribosomal protein S20-1 6 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121490g00001 Stsc-Chr121490 1 873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121490g00001 1 106 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 88.679 6.76e-67 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121490g00001 K02969 - cpap:110823078 209.92