Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121482g00003 ATGAAGATTGAGAAATCACCTCCTTTGGATGATCTCGTTGGGATTGATTCAAAGTTGGAAGAAGTTGGTGGCCACATTCGTATTGAGGTGAATGATGTTCGCTTCATTGGCATATGGGGAATAGGCGGCGTTGGTAAGACAAGTATTGCTAGAAGAGTTTATGAAACCAATCGAAGTAAATTTAAAGCTAGTTGCTTTCTTGCCGATGTAAGAGCGACATGTGAGAAAGAAGGTATTGTTTCAATACAGAAGCAACTTCTTGATCGAATGAATTCAAAGGCTACTTTCTACAATGAGTTTAAGGGAAGAGAGTTGATTCGTGACTCTGTGTGCAATAAGAAGGTCCTTCTTGTTCTTGATGATGTAGACGACGAAAGCCAATTGAAGAATTTGGCTGGTGCAAAAGACTGGTTCTGTCCTGGAAGCAGAATAATAATCACAACTAGAGATAGACATGTTCTAAATGTTCCTCGAGCAGAGATTATAACTTGTGAGGTTGAAAAGTTAAAGGAAAATGAAGCACTTAAACTGTTTTGTTTGAAAGCTTTTGAAAGGCCCGAACCTGAAGAAGAGTATCTGGATTTGCTCAAGGAATTGGTTGAGTATTGTCATGGTCTTCCATTGGCACTTGTAGTATTGGGTTCCCATCTTCATGAAAAACCCATTCGTGTTTGGCAAAGTGCTATTGAAAACATAAAGAGCTCTCCGGATAATGACATTTTTAATATATTGAAAATAAGTTATGCTGGTTTACGTCTTCGGGAAAAGGAACTTTTTTTAGATATTGCTTGCTTTTTCAAAGGATGTGAGAGAGGTTATGCAACAAATATATTGAAAATGTGTGGTTATCATGCTGAAGATGGCATTGTTACTTTAATAAATAAATCATTGCTCACTATAATAAATGATGGTTTTGGTGGTGAAATGCTGGGGATGCATGATCTGCTTGAAGCAATGGGCAAACATATTGTAATTCAAGAATCTCCCAATGATCCCGGCAAGCGTAGTAGGTTGTGGTCTTATAAAGATGTTGATCTTGTACCTGTACAAAAGTTACTGCCATTTTTTAACGATATGACGGCTAAAGTGTGTTGGTCGAAGAAGCTCATCATTTTACATTGGGTGAAAGCTCACATTCTCGGAAATATTCCTTGTTCAGTAAGGGTTTTGCGCTGGCCATATTCTCCAATGGAAACTCTACCCCTTATAGATCAACACTATGAACTTGTTGAAATTTATCTTTCTTGGAGCAGCATTGTACATGTGTGGCATGGAAAGAAGTTTCTAGATAATTTAGAGAACTTGGATCTGTCATGGTGCCGTTTTTTGGAACAAATGCCAGACATTTCTGGGGTTCCGAATCTTAAAAGACTTAATCTTGAGGGATGTCGGAAGCTGAAATATATTCACCCTTCTTTTGCAGACCACAAAAGCCTTGTTGAATTGAATTTAAAGGGATGTGAGAGTCTTGAAACACTTGCAGATAAAATGGAAATGAGTTCACTCAAGAAACTAAATCTATGCAAGTGCACTAGTTTGAGAAGAGTGCCAGAATTTGGGGAATGCATGAATCAGTTATCAGTTCTTACTTTAAGTGATACAAACATAGAAGAGCTGCCCAGGACGTTCGGAAATTTGGTTGGCCTGTCTCATTTGGACTTGAGCAATTCCAATATCCATGGGCTTCCAATAATTATCCATGAACTTCCCATGCTTACATGTCTGATTCTAAGAAGCTGTTACAGTATGAAGACTTTGCCAAATCTTCCATCGAGGCTAAGAGCATTAGACGCATCAGATTGTATGTCATTGGATTCATGGAATAGTTCAAATGTTATATCAAAGGCGTGTTGTGGCTTTGCAGAATCAGCTAAGCAAGATGGTGAAGACGTATTGCAAATGCTGATCCCAGGGGAAGAAATTCCAGCATGGTTTGAACATCAGGAAGAAGGTGACACTGTATCAGTCTCGTTCCCTTCAAGTGAAACCCTCTCACTTACTCTCTGTTTCCTATTAGAATGTAAAGATAGAAATATCGTCCAAGGACGGCCGGCAGTGATCTGCAACGGTAAAGAACTCGTCAACCAGAGTTTATTTGAGGTGTCTTTCAGTTTCCTTACTCCGCATCATCTTTTAATTGTCTGCTTGAACAGTTACTATTTTAGAACCTGTTATGCAAACCTGATTGCTTTCAAATGTCATTTTTGA 2208 0.3868 MKIEKSPPLDDLVGIDSKLEEVGGHIRIEVNDVRFIGIWGIGGVGKTSIARRVYETNRSKFKASCFLADVRATCEKEGIVSIQKQLLDRMNSKATFYNEFKGRELIRDSVCNKKVLLVLDDVDDESQLKNLAGAKDWFCPGSRIIITTRDRHVLNVPRAEIITCEVEKLKENEALKLFCLKAFERPEPEEEYLDLLKELVEYCHGLPLALVVLGSHLHEKPIRVWQSAIENIKSSPDNDIFNILKISYAGLRLREKELFLDIACFFKGCERGYATNILKMCGYHAEDGIVTLINKSLLTIINDGFGGEMLGMHDLLEAMGKHIVIQESPNDPGKRSRLWSYKDVDLVPVQKLLPFFNDMTAKVCWSKKLIILHWVKAHILGNIPCSVRVLRWPYSPMETLPLIDQHYELVEIYLSWSSIVHVWHGKKFLDNLENLDLSWCRFLEQMPDISGVPNLKRLNLEGCRKLKYIHPSFADHKSLVELNLKGCESLETLADKMEMSSLKKLNLCKCTSLRRVPEFGECMNQLSVLTLSDTNIEELPRTFGNLVGLSHLDLSNSNIHGLPIIIHELPMLTCLILRSCYSMKTLPNLPSRLRALDASDCMSLDSWNSSNVISKACCGFAESAKQDGEDVLQMLIPGEEIPAWFEHQEEGDTVSVSFPSSETLSLTLCFLLECKDRNIVQGRPAVICNGKELVNQSLFEVSFSFLTPHHLLIVCLNSYYFRTCYANLIAFKCHF 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121482g00003 735 SUPERFAMILY L domain-like 324 605 - -
Stsc121482g00003 735 Pfam NB-ARC domain 30 236 IPR002182 GO:0043531
Stsc121482g00003 735 Gene3D Ribonuclease Inhibitor 516 618 IPR032675 -
Stsc121482g00003 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 262 IPR027417 -
Stsc121482g00003 735 Gene3D Ribonuclease Inhibitor 362 515 IPR032675 -
Stsc121482g00003 735 Pfam C-JID domain 636 712 IPR045344 -
Stsc121482g00003 735 Gene3D - 2 164 IPR027417 -
Stsc121482g00003 735 PRINTS Disease resistance protein signature 427 443 - -
Stsc121482g00003 735 PRINTS Disease resistance protein signature 35 50 - -
Stsc121482g00003 735 PRINTS Disease resistance protein signature 203 217 - -
Stsc121482g00003 735 PRINTS Disease resistance protein signature 109 123 - -
Stsc121482g00003 735 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 518 IPR044974 GO:0006952
Stsc121482g00003 735 Gene3D - 168 252 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121482g00003 Stsc-Chr121482 3342 6955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121482g00003 11 605 WRKY Transcription Factor Family AT4G12020 31.171 8.38e-72 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121482g00003 - - adu:107485873 711.064