Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121482g00002 ATGGCATCTTCCATCAGTGAATCCTCTTCTTCCTATACTCCTCGTCCTAGATCATGGACATATCATGTGTTCTTGAGTTTCAGAGGACAAGACACTCGTACAGCATTCACTGATCATTTATGTGCCTCGCTTGAAAGGAAGGGAATCACAGCTTTCAGAGATGACAAAGACCTTGAGAGAGGTGATGTTATTTCGCATGAACTTGTCAAAGCTATTGAAGAATCTATGTTTGCCATTATTGTTCTCTCCCCAAACTATGCATCCTCCAGTTGGTGCTTGGATGAGCTCCTAAGGATTCTCGAATGCAAACACAGCTTGGGGTTACAGATTGTTCCTGTTTTCTATGGTGTTGAGCCTTGTGATGTGAGACACCAAAAAGGAACCGTTGATGAACCTTTCAGAAAGCATGAACACAGATATGGAGAAGGCAGTGACAAGGTTAGAAGGTGGAGAGATGCTTTCTCAGAACTTGCTAGTTATTCTGGTTGGCACTGCAAACATCAACATGAGGCAAGATTTGTGGAAAGTATTGCTGAGCACATACACAGAAAGCTAATTCCAAAACTGCCATCTTGCACTAAGAATCGGGTTGGGATTGCTTCAAGGTTGGAGGAAGTGATTAAACTCATGGGTATTGGGTTGAATGATGTCCGCTTCATAGGTATATGGGGCATGGGTGGCATAGGTAAGACAACTATCGCTAGAGCAGTATACGAAGCCATCCGTGGTGAATTCAAAGTTTGTTGCTTCATGAGAAATGTTAGAGAATTGTCTGCAAGAAATGATTTTGTTCAGTTACAAAGAGACCTTCTTGCATGTTTAAGCATGAGTAGTAGTTATTTTCATGACATAGAAGATGGAAAAAATATAATAAAAAATGCTTGTTGCAATAAGAAGGTTCTTCTTGTCCTTGATGATGTAAGTGAGCTAAAGCAATTAGAGAATTTGGCAGAGAATCAAGATTGGTTTGGTCCTGGAAGCAGAATAATAATCACAGCTAGAGATATGCACTTGCTAGACATATATGGAGTGCATGGAACTTATGAAGTTAAAGGGTTGGATCAAGAAGAATCTTATAATCTATTTTGTTTCAAAGCCTTTAAACAACTTGAACCTAAAGAAGGGTATTCTTCTTTGTCTAAAGAAGTTGTGAAATATACTAAGGGTCTTCCTTTGGCGGTTGAGGTTTTAGGTTCCTATCTATGTGGAAGAAATGTTGAATTTTGGCTTAGTACCATTAGAGAAATAATGAGTTATCCACATTTTGAAGTTCTCAATACATTGAAAATAAGCTACAATCATTTGACACCATTAGAGAAGAGTATTTTTCTTGATATTGCTTGTTTCTTCAAAGGAATGAAAAAAGATGAAGCAATGCATATATTAAGAATGTGTGATTTTTATGTTGGAGTTGGAAGTGACATTGGAAGTGGAATTGTAACATTGATTGATAAAGCTTTGGTAACTTTGGATCAGAATAACAAGTTAGAAATGCATGATTTGCTTCAAGAAATGGGGAGGCATATTGTGTATGAAGAATCTCCGAATAACCCCGGAAAACGCAGCAAGCTGTGGTCTAAAGATGACATTCACCAAGTATTGACAAATGATATGGGAACAGAAGCAATTCAAACTATGGTTCTAAGATTTGGAATGATGCGTTTTATTGGTTTCGGAGTAAGCCCTTCGAAGCATATTGGAGCATTGAAGCCTTCTCAAAGATAA 1725 0.3809 MASSISESSSSYTPRPRSWTYHVFLSFRGQDTRTAFTDHLCASLERKGITAFRDDKDLERGDVISHELVKAIEESMFAIIVLSPNYASSSWCLDELLRILECKHSLGLQIVPVFYGVEPCDVRHQKGTVDEPFRKHEHRYGEGSDKVRRWRDAFSELASYSGWHCKHQHEARFVESIAEHIHRKLIPKLPSCTKNRVGIASRLEEVIKLMGIGLNDVRFIGIWGMGGIGKTTIARAVYEAIRGEFKVCCFMRNVRELSARNDFVQLQRDLLACLSMSSSYFHDIEDGKNIIKNACCNKKVLLVLDDVSELKQLENLAENQDWFGPGSRIIITARDMHLLDIYGVHGTYEVKGLDQEESYNLFCFKAFKQLEPKEGYSSLSKEVVKYTKGLPLAVEVLGSYLCGRNVEFWLSTIREIMSYPHFEVLNTLKISYNHLTPLEKSIFLDIACFFKGMKKDEAMHILRMCDFYVGVGSDIGSGIVTLIDKALVTLDQNNKLEMHDLLQEMGRHIVYEESPNNPGKRSKLWSKDDIHQVLTNDMGTEAIQTMVLRFGMMRFIGFGVSPSKHIGALKPSQR 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121482g00002 574 Gene3D - 15 185 IPR035897 -
Stsc121482g00002 574 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Stsc121482g00002 574 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 163 IPR035897 -
Stsc121482g00002 574 Pfam TIR domain 21 191 IPR000157 GO:0007165
Stsc121482g00002 574 Gene3D - 186 345 IPR027417 -
Stsc121482g00002 574 Gene3D - 352 436 IPR042197 -
Stsc121482g00002 574 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Stsc121482g00002 574 SUPERFAMILY "Winged helix" DNA-binding domain 423 534 IPR036390 -
Stsc121482g00002 574 SMART till_3 20 160 IPR000157 GO:0007165
Stsc121482g00002 574 Pfam NB-ARC domain 215 412 IPR002182 GO:0043531
Stsc121482g00002 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 446 IPR027417 -
Stsc121482g00002 574 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 543 IPR044974 GO:0006952
Stsc121482g00002 574 PRINTS Disease resistance protein signature 219 234 - -
Stsc121482g00002 574 PRINTS Disease resistance protein signature 387 401 - -
Stsc121482g00002 574 PRINTS Disease resistance protein signature 294 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121482g00002 Stsc-Chr121482 312 2394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121482g00002 13 555 WRKY Transcription Factor Family AT4G12020 29.872 7.56e-65 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121482g00002 - - aip:107635063 968.763