Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121481g00004 ATGTCCATGTCTGGTTTGGATTTAGGAACAGCATCACTCTTCCTTCACAAACCAGAATTACACCTTCAACAACACCACCATTATCACCATTCACAACAACAACAACAACAACAAACACCAAATCCTGCACCTGCACCACAACTCTCCAGTGAAGATGATGATAGCAGCCAAGGCGGCGGAAGCGGTGGCTTTGACCTCGCCTCCGTCCGCCGTTCCCGTGGCCGTCCTCGGGGCTCGAAGAACAAGCCGAAACCGCCACTCATAATCACAAGAGCGAGCGACAACACGCACAGCGCTCAAATCCTCGAAATCGCCAGTGGCTCCGACGTCTTCGACAGCGTCGCCACCTACGCGCGGCGGCGCCAGCGAGGGATCTGCGTCTTGAGCGGCAGCGGCGCCGTCACCAATGTCACCATCCGAGACCCCGGGGCGCCGGGCTCCGTCGTCACGCTCAACGGAAGGCTCGAGATACTCTCGCTCTCTGGCTCGTTCCTCCCGCCGCCTGCTCCGCCTGGCGCGACGAGCCTCAGTATATACCTCGCCGGAGGGAAGGGACAGGTCATCGGAGGAAACGTCGTCGGAGATCTGATTGCGGCGGGGCCGGTGATGGTCATTGCCTCGTCGTTCACTAACGTGGCGTACGAGCGTCTGCCGTTGGACGAGGAGGACGAAGAGAAGCTCCAAATTCAGCCGGCACCGGCACCGGAGGGTCCTCAGGGAAACTCCGGCGGTTGCGGAGTCAGGAGCAGCGGGTTTCTGGATCCTTCTTCTGGTTTGGCGTCCTTCAATTTTCCGGTTGGTATGAATCAAAATGTTCATCATAATCTGCCTGTAGACGGTTACTTTTCAGGTCCACGCCCTCTATTTTAA 870 0.577 MSMSGLDLGTASLFLHKPELHLQQHHHYHHSQQQQQQQTPNPAPAPQLSSEDDDSSQGGGSGGFDLASVRRSRGRPRGSKNKPKPPLIITRASDNTHSAQILEIASGSDVFDSVATYARRRQRGICVLSGSGAVTNVTIRDPGAPGSVVTLNGRLEILSLSGSFLPPPAPPGATSLSIYLAGGKGQVIGGNVVGDLIAAGPVMVIASSFTNVAYERLPLDEEDEEKLQIQPAPAPEGPQGNSGGCGVRSSGFLDPSSGLASFNFPVGMNQNVHHNLPVDGYFSGPRPLF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121481g00004 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 228 - -
Stsc121481g00004 289 CDD DUF296 101 209 IPR005175 -
Stsc121481g00004 289 MobiDBLite consensus disorder prediction 221 248 - -
Stsc121481g00004 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 211 IPR005175 -
Stsc121481g00004 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 239 IPR014476 GO:0003680
Stsc121481g00004 289 MobiDBLite consensus disorder prediction 24 93 - -
Stsc121481g00004 289 ProSiteProfiles PPC domain profile profile. 92 230 IPR005175 -
Stsc121481g00004 289 FunFam AT-hook motif nuclear-localized protein 97 225 - -
Stsc121481g00004 289 Gene3D - 99 233 - -
Stsc121481g00004 289 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121481g00004 Stsc-Chr121481 28533 29532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121481g00004 3 270 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 53.597 1.05e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121481g00004 - - csav:115715847 294.278