Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121477g00002 ATGATGGAAGAAGAAAGGCATGGATCAGAATGTTCCAAGACAAGAAGCCCTTGTAACGATAATAAGAATAATAACAATGAAGATGAAGGTTATTATGAAGAAGAGAGTGAGGGCAACAATGAAGAAGAAGATGGTGGTGATGGAGGGAGTTCAAGCAACAGCACAGTGGAAGAGAACAACGAGAATAAGAAGAGTTCATCAACATCAGTAAGACCTTACGTCAGATCCAAGTTGCCAAGGTTGCGTTGGACCCCTGATCTTCATCTCAGATTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACACCTAAACTGGTTCTTCAGTTGATGAATATCAAAGGCTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGTAAGAAGGTGGAGGATACAAATCATCATCAAGTAATGGGTGATCATCATCATAGGCTTCTAATAGATAATGGAGAGAGAAATAATGTTTATCATCTCACCCAGCAGCTTCCCATGCTTCAAGGCTATAGATATGGATATGGATATGGAGTTGCTTCTTCTTCTCTTGGTGTGTATGAAAACATGGTGCATAGGCCTAATTTGATAGCTGAAAGAATCTATAATGGTAATGTGACTCATCATCATAGCATTTTCCAAGTGGATTCTTCTCATAATTCTGTTGATTCAACAAGCTATCCTCATCCTCATCATCATCATCATCAATTTCTATCATTTGGTAATGGCCAAGAATCTTTAATAAGCAGTCAGATTGAAAAGCCTAGAGCTCAAGATTTCTTCATGATGCCTAATAATGCTAATACTAATTTGAAAAGGAAGGCTTCATCATTAGAAAATAGTGATGATATTGATTTGGATTTGTCTCTTAAATTAAAAACTTCAAGGGTTGCTTTTGATGATGAGAAGCAATTAGGAAGAAGCAGCATGATGATAATGACTATGGGGGAAGAAGAACACCATGAAGGAATAGTTGATAGCAATCTATCACTCTCTTTGCACTCTCATCATCAACAATGTTCAGGGTTGAAGGAACCATCACAAGATCACTGTAATAATAAAAAGGTGAAAGGGAAAAAGGGCACTGCTAATTTGGATCTAAGAATCTGA 1119 0.3753 MMEEERHGSECSKTRSPCNDNKNNNNEDEGYYEEESEGNNEEEDGGDGGSSSNSTVEENNENKKSSSTSVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEDTNHHQVMGDHHHRLLIDNGERNNVYHLTQQLPMLQGYRYGYGYGVASSSLGVYENMVHRPNLIAERIYNGNVTHHHSIFQVDSSHNSVDSTSYPHPHHHHHQFLSFGNGQESLISSQIEKPRAQDFFMMPNNANTNLKRKASSLENSDDIDLDLSLKLKTSRVAFDDEKQLGRSSMMIMTMGEEEHHEGIVDSNLSLSLHSHHQQCSGLKEPSQDHCNNKKVKGKKGTANLDLRI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121477g00002 372 MobiDBLite consensus disorder prediction 45 71 - -
Stsc121477g00002 372 FunFam Myb family transcription factor 77 135 - -
Stsc121477g00002 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 135 IPR017930 -
Stsc121477g00002 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 134 IPR006447 GO:0003677
Stsc121477g00002 372 Gene3D - 78 135 - -
Stsc121477g00002 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 58 219 IPR046955 GO:0003700
Stsc121477g00002 372 MobiDBLite consensus disorder prediction 351 372 - -
Stsc121477g00002 372 Pfam Myb-like DNA-binding domain 81 131 IPR001005 -
Stsc121477g00002 372 SUPERFAMILY Homeodomain-like 78 133 IPR009057 -
Stsc121477g00002 372 MobiDBLite consensus disorder prediction 1 71 - -
Stsc121477g00002 372 MobiDBLite consensus disorder prediction 339 372 - -
Stsc121477g00002 372 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121477g00002 Stsc-Chr121477 13015 14928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121477g00002 55 140 G2-like Transcription Factor Family AT2G42660 67.391 3.76e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc121477g00002 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121477g00002 - - adu:107484994 404.445