Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121477g00001 ATGACTAGCGCATACGAAGAGCGGCTACCGGCATCACCGGAATGGCTAAACAACGGTGACAACGCATGGCAGATGACGGCGGCGACACTCGTCGGCCTCCAAAGCATGCCGGGACTTGTTATACTCTACGCAAGCATAGTCAAGAAGAAATGGGCTGTCAATTCCGCTTTCATGGCTCTCTATGCTTTTGCGGCGGTTCTAATTTGTTGGGTCCTTCTCTGTTACCGCATGGCCTTCGGTGAGGAGCTTCTTCCATTTTGGGGGAGAGGAGGACCAGCACTTGGCCAAAAGTACCTAATCAAACAAGCCAATGTTCCTAAAACCGCTCACTATTACAAAAATGGGAATCTTGAGAAGCCTATGGAGAAACCCTTTTTTCCTATGGCTTCCCTTGTGTATTTTCAGTTCCAATTTGCAGCAATTACCATGATCTTGCTGGCTGGTTCTGTTCTTGGGCGCATGAACATTAAGGCTTGGATGGCTTTTGTGCCTCTTTGGCTCATATTTTCTTACACTGTTGGTGCTTTCAGCCTTTGGGGTGGTGGCTTTCTTTACCATTGGGGTGTTATTGATTACTCTGGCGGCTATGTTATTCATCTTTCCTCAGGAATAGCTGGATTCACTGCTGCCTATTGGGTTGGGCCAAGGGTGAAGAGTGATAGGGAAAGGTTCCCGCCAAACAACGTGCTACTGATGCTTGCGGGTGCAGGGTTGCTGTGGATGGGGTGGTCAGGGTTCAACGGGGGAGCACCGTACGCCGCGAATACAGTGTCGTCGATTGCTGTGTTGAACACAAACATATGTGCGGCCACAAGCCTCCTTGTGTGGACGTCTCTTGATGTTGTTTTCTTTGGGAAGCCCTCCGTGATCGGAGCTGTTCAGGGTATGATGACTGGTCTTGTCTGCATCACCCCGGCTGCTGGGATTGTGCAATCGTGGGCGGCTATAGTGATGGGAATCCTATCTGGAAGCATTCCGTGGGTCTCAATGATGATTCTTCACAAAAAGTCAAGCCTCCTTCAGAAGGTCATCATCATCCTCCTCTTTAATTTCTCTCTTTTATCTTCAAAACAAGACTTGCTCTCTATTATTTCTCACCCTTAA 1104 0.4864 MTSAYEERLPASPEWLNNGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGEELLPFWGRGGPALGQKYLIKQANVPKTAHYYKNGNLEKPMEKPFFPMASLVYFQFQFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRVKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANTVSSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCITPAAGIVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVIIILLFNFSLLSSKQDLLSIISHP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121477g00001 367 SUPERFAMILY Ammonium transporter 15 336 - -
Stsc121477g00001 367 Pfam Ammonium Transporter Family 22 335 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc121477g00001 367 Gene3D Ammonium transporter AmtB like domains 2 340 IPR029020 -
Stsc121477g00001 367 PANTHER AMMONIUM TRANSPORTER MEP2 7 340 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc121477g00001 367 ProSitePatterns Ammonium transporters signature. 191 216 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc121477g00001 367 FunFam Os01g0831300 protein 8 222 - -
Stsc121477g00001 367 PRINTS Rhesus blood group protein signature 230 248 IPR002229 GO:0005886
Stsc121477g00001 367 PRINTS Rhesus blood group protein signature 316 334 IPR002229 GO:0005886
Stsc121477g00001 367 PRINTS Rhesus blood group protein signature 135 151 IPR002229 GO:0005886
Stsc121477g00001 367 PRINTS Rhesus blood group protein signature 261 283 IPR002229 GO:0005886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121477g00001 Stsc-Chr121477 940 4116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121477g00001 128 343 Inorganic Solute Cotransporters AT2G38290 83.796 5.70e-124 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121477g00001 K03320 - gmx:100790119 627.091