Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121476g00006 ATGAGTCATATAAAGAAGAAAATCTCATCTTCGTCGTCACCCTCATCATCATCATCATGTGTAATCTTCGCCATAATTTTCAGCCTCTTCTCATGCCTCTGCCAGCTCACACTCTCCGATTCAAGAATCTCAGAAGCAGGACTCAGCTGCGGCACAACGAGGGCCCCACTCTACTCCAACTACATCCCAACCTTCATCAAAGAAATGGAGTTCCTCTCCCAGCAAGTAACCGCCCACAACTGGGGAACCCATTCCGTCGACGGCGCCGGTACCGGCAGCGGCACCACCATGTACGGCCTCGCGCAGTGCTTCAACGACCTCTCCCACACAGACTGCCTCCTCTGCTACGCCGCTAGCCGGACCACTATCCCGCGCTGCCTCCCCTCCCTCTCCGCACGAATCTACCTTGACGGCTGCTTCCTCCGTTACGACCGTTACCGCTTCTATTCTGAGGACACCGACGCCGTCAGGGACACCGTGAATTGCACCGGTGGGAACGTAGAAGGGGTGGCTCACGAGAGGAGTGTTGGGAGGGTGGTTGATGGTGTTGTTCTGAAAGCTGTTGCTAATGGTGGCGGTTTTGCTGTGGGAGAGATTGATGGAGTTTACGCTTTGGCGCAGTGCTGGAAAACCGTTGGGAATGATGGGTGCAGAAACTGCTTGAGGAAAGCTGGGAAGCAAGTGAGAGGGTGCTTGCCGAAGAAAGAAGGAAGGGCCTTAAATGCTGGCTGTTATTTGAGGTATTCAACCCACAAGTTCTACAATGAGCAGAGTACTGTAGAAGCTGGAAGTGGGTCTCTGAGAAGAGGAGTCATAATAGCAGCAGTGTTAGCAATGGCTGCAGTTATAATGCTTTCTATTTCTGCCTCCTATGTGGTCTTCACCAAATTCTCAAAGATTAAAAAAGAAAAAAATAATATTGGTCAGATTTGCTCTTCCATAAGGGATTCTAGCTTGAATTACAAGTATGAAACTCTGGAGAAAGCCACGGATTATTTCAACCCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGTTCGGTATTCAAAGGTGTTCTCCCAAATGGGAAAGTTATTGCTGTTAAGAGGTTGGTCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTAAATTTAATCAGTGGAATTGAACATAAGAACCTTGTGAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTTTATGAGTTCCTTCCCAACAAGAGTTTAGATCAATCTATCTTTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCCAAAATAAGAATCATTCATCGAGACATCAAAAGCAGCAACATTCTTCTGGATGAGAATCTGACACCTAAGATTGCAGATTTTGGTCTTGCTCGCTGTTTTGGTGCTGATAAGACACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTCGAGGACAACTTACGGATAAAGCCGATGTCTACAGTTTTGGAGTACTTGTTCTTGAGATTGTATGTGGCAGGAGGAATAATGTCTTTAGAGAGGACTCTGGTTCCCTTTTGCAAACGGTTTGGAAACTGTACGGATCAAATACATTGGCTGAAGCTGTTGATTCTTCTTTGGCAATTGATGATTATCCTACAAATGAAGCATTAAGGGTGCTTCACATTGGATTGCTATGCACACAAGCTTCTGCTTCCTTGAGGCCATCCATGACTCAAGTTGTGAACTTGTTAACTAATTCAAATATAGATGTTCCTACACCAACTCAACCTCCTTTTATGAACACTGGAGTGCCTGACTCTGATACCTCAGTTAGGTCTTACAGCACAAACAGCTTTGTGTCAAATGCATTGAAGAAGATCGGAGTTTCCAACAGCTTCTCAGAGTTATCGAGTTCGAGCAGTTCAGATAGGCCATCAGGAATTGAAGAATCAATTGTCCAAACCTGA 1962 0.4587 MSHIKKKISSSSSPSSSSSCVIFAIIFSLFSCLCQLTLSDSRISEAGLSCGTTRAPLYSNYIPTFIKEMEFLSQQVTAHNWGTHSVDGAGTGSGTTMYGLAQCFNDLSHTDCLLCYAASRTTIPRCLPSLSARIYLDGCFLRYDRYRFYSEDTDAVRDTVNCTGGNVEGVAHERSVGRVVDGVVLKAVANGGGFAVGEIDGVYALAQCWKTVGNDGCRNCLRKAGKQVRGCLPKKEGRALNAGCYLRYSTHKFYNEQSTVEAGSGSLRRGVIIAAVLAMAAVIMLSISASYVVFTKFSKIKKEKNNIGQICSSIRDSSLNYKYETLEKATDYFNPSRKIGQGGAGSVFKGVLPNGKVIAVKRLVFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEFLPNKSLDQSIFAEGLAYLHGGSKIRIIHRDIKSSNILLDENLTPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEIVCGRRNNVFREDSGSLLQTVWKLYGSNTLAEAVDSSLAIDDYPTNEALRVLHIGLLCTQASASLRPSMTQVVNLLTNSNIDVPTPTQPPFMNTGVPDSDTSVRSYSTNSFVSNALKKIGVSNSFSELSSSSSSDRPSGIEESIVQT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121476g00006 653 FunFam Cysteine-rich receptor-like protein kinase 2 416 590 - -
Stsc121476g00006 653 FunFam Cysteine-rich receptor-like protein kinase 2 43 148 - -
Stsc121476g00006 653 Gene3D - 159 253 IPR038408 -
Stsc121476g00006 653 Gene3D - 47 148 IPR038408 -
Stsc121476g00006 653 MobiDBLite consensus disorder prediction 631 653 - -
Stsc121476g00006 653 ProSiteProfiles Protein kinase domain profile. 333 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121476g00006 653 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 97 611 - -
Stsc121476g00006 653 FunFam Cysteine-rich receptor-like protein kinase 2 299 408 - -
Stsc121476g00006 653 Pfam Protein kinase domain 335 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121476g00006 653 Pfam Salt stress response/antifungal 65 146 IPR002902 -
Stsc121476g00006 653 Pfam Salt stress response/antifungal 199 250 IPR002902 -
Stsc121476g00006 653 ProSiteProfiles Gnk2-homologous domain profile. 43 148 IPR002902 -
Stsc121476g00006 653 Gene3D Transferase(Phosphotransferase) domain 1 416 590 - -
Stsc121476g00006 653 SMART serkin_6 333 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121476g00006 653 Gene3D Phosphorylase Kinase; domain 1 292 408 - -
Stsc121476g00006 653 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Stsc121476g00006 653 SUPERFAMILY Protein kinase-like (PK-like) 316 616 IPR011009 -
Stsc121476g00006 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Stsc121476g00006 653 ProSiteProfiles Gnk2-homologous domain profile. 154 253 IPR002902 -
Stsc121476g00006 653 FunFam Cysteine-rich receptor-like protein kinase 3 158 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121476g00006 Stsc-Chr121476 25979 29722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121476g00006 23 478 Receptor kinase-like Gene Family AT5G40380 54.021 3.69e-177 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121476g00006 Pkinase 7.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121476g00006 - - gmx:100790404 939.873