Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121473g00003 ATGCAGATTGAAGTTGTTGCTATTGGAAAAATCCGAAAATGCTCTTCCTTCTCTTCCTATCTCAAGTGGCTGCCATCTCTCACTAAAACCCTCAAAATTTCTGAAGTGTGTGTTTCAAGTGCAAGCATTACAGGAGGAGATGCAAGATTAGCACCATGCTGTGATGAGGTTTTTGATTGTAGGCATTGCCACAACGATGCTAAGAACTCTGAGGAAGTTAATGTTAATGATCATCATGATATCCCACGCCATGAAATTAACAAGGTTCAACAATACTGCATAAAGTGTGGGGTATGCATGGGCAAATATTTTTGTGGCACTTGCAAATTCTTTGATGATGATGTTTCAAAGAATCAATACCACTGTGATGATTGTGGCATCTGCAAGTAG 390 0.3949 MQIEVVAIGKIRKCSSFSSYLKWLPSLTKTLKISEVCVSSASITGGDARLAPCCDEVFDCRHCHNDAKNSEEVNVNDHHDIPRHEINKVQQYCIKCGVCMGKYFCGTCKFFDDDVSKNQYHCDDCGICK 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121473g00003 129 ProSiteProfiles Zinc finger CTCHY-type profile. 100 129 IPR017921 -
Stsc121473g00003 129 Pfam CHY zinc finger 51 110 IPR008913 GO:0008270
Stsc121473g00003 129 ProSiteProfiles Zinc finger CHY-type profile. 34 127 IPR008913 GO:0008270
Stsc121473g00003 129 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 50 129 - -
Stsc121473g00003 129 SUPERFAMILY Zinc hairpin stack 101 129 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121473g00003 Stsc-Chr121473 24375 27007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121473g00003 51 129 C2H2 Transcription Factor Family AT3G18290 28.421 4.53e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121473g00003 K10144 - gmx:100812709 156.377