Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121471g00004 ATGTTGCCAGAGAATTTCAAAGAACAGCTTGCTTTGGCTGTGAGAAGCATCCAGTGGAGCTATGCAATATTCTGGTCTACTTCATCTACCCAACCCGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTGGAGCTCAATCCTGATCAGATAGGGTTGCAGAGGAGCGAGCAGCTTAGAGAGTTATTCAAGTCTCTCAAAGCTGCAGAAGCCAGCCCTCAAACCAAAAAGCCTTCAGCAGCACTATCCCCAGAAGATCTCACAGATACAGAATGGTACTACTTGGTTTGCATGTCCTTTGTATTCAACACTGGCCAAGGGTTACCAGGAAAGGCTCTTGCAAAAGCTGAACCAATTTGGCTGTGTGATGCTCCTTCTAGTGATTGTAGAGTTTTTAGTCGCTGTCTTCTGGCTAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCTTTTATTAATGGGGTCATTGAGCTGGGTACAACTGATCATGTCTCAGAAGATCTCAGTCTCATTCAACAGATCAGAACTTCCTACTTGGATATTCTTGATTTCGGTGTTCATAATATATATGGAGCTACATTGAGCGAAGATGTTGCTTGTGCATCATTTAATGTGAAACAAGCTCCAGAAGTAGGAGGTGCATTAATCAACACCACTTCTCCTAATAACAGTTCAAATGCATTTCAAGCCAATCAAACACCAGATGAAACATTCATGGCTGAAAGGATAAATAATGGCACCTCTCAAATCCAAACTTGGCAAGTTATGGATGATGAATTGAGCAATGGTGTCCATAATTCTAGTGACTGCGTATCTCAAACTCTTCAAAGTCCTGAGAAAATTGCTTCTCTTCCAAAGGGTGACAACCTCACTGACAATAGTGCCAAGGACCTTGAAAAGGGCAGTAATTCTAAAATGACATTAGTTGATCCTCGAAGCGACGACTGGCATTATCAGATGGTTCTTTCTACCCTTCTAAAAAGCTCAGACCAGTTATTCATGGGGATGCATTTTCAAAATTTTCATCAGGAATCAAGCTTTGTCAGTTGGAAGAATGCTGGGCCAGTGAGCAGCCAAAGACCAAGAACTGATGGAGGAACCTCACAAACTTTATTGAAGAAAATATTGTTTGAAGTTCCTCGGATGCACTTGGATGGGATACTTGAGTGTCAAGAAGAGAATGAATATAAAGAAGGAGTGAGAACAGAAGCTGAAGAAAATGGCATGAACCATGTTTTGTCAGAGAGAAGGAGAAGAGCAAAGCTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAATTACTAAGGATGACAAAGTTTCAATACTAGATGATGCAATAGAATACCTTAGAAAGCTTGAAAAAAGGATAAAAGAGTTGGAAGTTCATAAGGATCTAACAGATAGAGAGGCTAGAACTAAAAGATCACCTCAAGATATGGTGGAGAGGACTTCTGACAATTATTTTAACAAAACTGATAATGGCAAGAAATCAATGTCAAAAAAGAGGAAGTCTCGTGACATGGATGAGAAAAGTCCAGAGACTAATTCAGAATCTTTATTAAAAGGAAGTTGTACTAATAATGATGTTGATGTTAACATCAATGAGAATAATGAAGTTGAGGTTGAAATGAAATGCCCTTCAAAAGCAGGAATGTTTCTAAAAATTATGGAAGGAGTTAGCAGTCTCGGTTTGAATCTTCATTCAGTTCAGTCCAGAGAAGTTGATGGGAATCTTTATGTTACCCTTAAATCTAAGCTCGCAGGATCAACCATTGTATCAGTAAAAAGGATCAAACAAACACTACAAAATGTGGCTTCCAAGTGCTGA 1869 0.3981 MLPENFKEQLALAVRSIQWSYAIFWSTSSTQPGVLSWGEGYYNGDIKTRKTSQGVELNPDQIGLQRSEQLRELFKSLKAAEASPQTKKPSAALSPEDLTDTEWYYLVCMSFVFNTGQGLPGKALAKAEPIWLCDAPSSDCRVFSRCLLAKSASIQTVVCFPFINGVIELGTTDHVSEDLSLIQQIRTSYLDILDFGVHNIYGATLSEDVACASFNVKQAPEVGGALINTTSPNNSSNAFQANQTPDETFMAERINNGTSQIQTWQVMDDELSNGVHNSSDCVSQTLQSPEKIASLPKGDNLTDNSAKDLEKGSNSKMTLVDPRSDDWHYQMVLSTLLKSSDQLFMGMHFQNFHQESSFVSWKNAGPVSSQRPRTDGGTSQTLLKKILFEVPRMHLDGILECQEENEYKEGVRTEAEENGMNHVLSERRRRAKLNERFLTLRSMVPSITKDDKVSILDDAIEYLRKLEKRIKELEVHKDLTDREARTKRSPQDMVERTSDNYFNKTDNGKKSMSKKRKSRDMDEKSPETNSESLLKGSCTNNDVDVNINENNEVEVEMKCPSKAGMFLKIMEGVSSLGLNLHSVQSREVDGNLYVTLKSKLAGSTIVSVKRIKQTLQNVASKC 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121471g00004 622 MobiDBLite consensus disorder prediction 480 494 - -
Stsc121471g00004 622 SMART finulus 423 472 IPR011598 GO:0046983
Stsc121471g00004 622 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 188 IPR025610 -
Stsc121471g00004 622 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 420 481 IPR036638 GO:0046983
Stsc121471g00004 622 Gene3D - 411 483 IPR036638 GO:0046983
Stsc121471g00004 622 MobiDBLite consensus disorder prediction 480 541 - -
Stsc121471g00004 622 ProSiteProfiles ACT domain profile. 554 622 IPR002912 -
Stsc121471g00004 622 PANTHER TRANSCRIPTION FACTOR TT8 3 620 - -
Stsc121471g00004 622 MobiDBLite consensus disorder prediction 293 317 - -
Stsc121471g00004 622 Coils Coil 456 483 - -
Stsc121471g00004 622 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 417 466 IPR011598 GO:0046983
Stsc121471g00004 622 Pfam Helix-loop-helix DNA-binding domain 421 467 IPR011598 GO:0046983
Stsc121471g00004 622 MobiDBLite consensus disorder prediction 513 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121471g00004 Stsc-Chr121471 19731 22757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121471g00004 2 622 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.441 1.53e-174 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121471g00004 bHLH-MYC_N 1.1e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121471g00004 - - ahf:112732736 1030.01