Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121468g00001 ATGGGAGAATCCACGGCTAGGGTTTTCCCTAACCTTCAGTATGAGCAGCAACCGCAGTACACTGCAGGTATCATCAAGAAGATTCGACTGGAGAACTTCATGTGCCATGAAAACTTCGAGATGGAGTTCGGAGAGAACGTCAATTTCGTCCTTGGTCAAAACGGAAGTGGTAAAAGTGCAATCCTAGCAGCATTGTGTATTGCATTTGGTAGTCGTGCTAAAGGGACTGACAGGGCAAAGCATTTGAAGGATTTCATTAAAACTGGTTGCAGCAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAAGATGCTTTTAAGCCCGAAATATATGGTGATGTTATCATTGTTGAACGTAGGATATCAGAATCCACATGCTCCATTATTTTAAAAGACCACCAAGGAAAGAGAGTGGTCCATAGGATGGCGGATCTCCGGGAAATGGTTGAGCATTTTAATATTGATGTGGACAATCCATGTGTAATTATGAATCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAACATTAAAGATAAATTTAAGGCTACACTCCTGCAACAAGTCAATGATCTCTTGGAAACCATTTCTAAAGAAATAGGTGTTGCACATGGCATAGTTAATGACTTAGAGGGTTCAATAAAGCCCATTGAGAAGGAGCTTAATGAGCTGCAAGCCAAAATCAAAGCTATGGAACACATTGAACAAATGTCTGCAGAGGTTAAAAAATTAAAGAATAAACTTGCATGGTCTTGGGTCTATGATGTGGATAAGAAGCTTGAGGCGAAAAGTGCAATGATTGATAAGCTAAAGAACCGGATACCTGCCTGCCAAGAAAAGATTAATCAACAATTGCTTAAGATTGAAACATTGAAGGAAGGCATCTCCAAGAGGAAAGATGAAATTGCAATTATGACTGAAAAGTATACACAACTTAAGCAAATTATTGCTGATCAAAGTCAGCTTTGGCCTTTGGCTGAAAAAGAAGTGCTGGTACTTGAGCAGGACTGCAATTCCAAAACTAGCCAAATACAGAAGATGTTACAGCGACTTAAAAAACTTGAACAAGATGTCCAGGATCTTCATGAGTTGGATGTGAAAAATACTCAGGCTGAAAATTATGACCTGGAGGAGAAACTTGAGGGTCTCCAACTTGAGGTTCGGGCCGCTGAGCTAGAATGGGAAAGGTTAAATGAGGAAGAGACTATGTTAGCGAACAACATAAATAAGCAAAAGGAAGAAATTCAGACAATTACTGATAAGATCCGAGACCATGAAAACAATTGTAAACAAATCTCCAAGAAAATCTACGATTTTCAACAGAGGCAATGCAATAAGATTTCAGCTTTTGGAGGAGACAGAGTAATGGAACTGATGCGTTTAATTGACAGAGATCATCGAAAGTTTGGGGTGCCACCAATTGGTCCAATTGGTGTCCACTTGAATTTACTTGATGCTGAAAAATGGGCTGATACTGTTGAACATGCCGTTGGGGGAATGCTCAATTCCTTTATAGTAAATGATCATAAGGATTTTCTTCTTCTGAAAAAATTGGCGAAGGAAGCAAAGTATTACAAACTTAGAATTATTATTTACAATTTTGAAATAGAGAGGTTAAAAATACCACAGCACTTGCTTCCTCAGACAAAACATCCATCAACACTTTCCCTTTTACAATCTGAGAACCACACTGTGATGAATGTCTTAGTGGATATAGGAAATGTTGAGAGACAAGTACTCGTAAAAGATTACGAGACTGGCAAAGTGGTTGCTTTTGAACAAAAGCCTCGGAATGTGAAAGAGGTCTACTCAGCAGATGGACGGAAAATGTTTTCGCGGGGTAATGTGGAGACTACCATTCCACTACAGTCGAATGGTCCTGGTCGTCTATGCAGTTCTTTTGAAGATTATATTAAGGATCTCCGAAGTAAGGCATCTGATGAACAAAATGCAGTTAATGAAGGTAAAAGTAGTAAGCAACAGGCAGAGATCAAACTTAGGGAACTAGAATCAGATCCGACACGTGTAAAGAGGCGTCGTGATTGTGAAAAAGCTGGAAGAACTTTATATTCTAAGAAGCTCGCTTTGGAGGAGGCAATGAATCAGCGTGCTGGTGAAAATAGCTCAATTCCTTTGTCATCTGTTGAGGAGCTTCGTGTAGAAATTACAGAACTCGAGAAGAAACTAGAAGAAGAAAAAGTATTATTGGAAGCCCTTCGACAAAGGAAGGATGAAGCATCGGGGAAGGCAAAGGATCTTAAAGTTAAATTTGACAAGTTGCGTGAGTCAGCAGAGAAGAAATTTGCTGCCATGGAAAAAGCTGGGACTGAGTGCAGTGAGATTGAAAATGAATTGAAGTTGGCTGAAAAGGGAAAGGCTCACTATGAAAGTCTCATGGCAAACACTGTCCTACCTGCTATTAAGACGGCTGAGGAAGAATATCATGAGCTTACAAAAATGCGTGAGGAAAATGCTGAGAAGGCTTCCAAAATTTGCCCTGAGAATGAAGCCAATGGTTGTGGTTCGTTAGAAGGTTCTGATATGAAAACCCCAGAACAAATCAGTGCTGAATTAGGAGAACTAACTCAGAAAGTTGAGCGTGAGTGCCAAAGGCACTCTGAACCAATTGCTGATCTTAGGATACTTTATGAGAAAAAAGAACGTAAGATTAAGAAGAAGCAGCAAATGTACAAAGCTCTTCGACAAAAGATGGATGCATGCCAGAAAGCCTTAGGGATACGAGGGGTCAAGTTTAAGAAGAATGCAAATTATCTGAAGCAACAGCTTTCTTGGAAATTTAATGATCATTTGAGGAAGAAAGGGATCAGCGGACTTATTAAAGTTAATTATGAGGAGAAAACCTTATCTATTGAGGTCCAAATGCCTCAAGATGCATCAAACAGAGCTGTTCGAGACACCAGGGGGCTTTCAGGTGGGGAGCGTTCGTTTTCAACATTATGTTTTGCATTAGCCCTTCACGAAATGACAGAATCCCCTTTTAGAGCAATGGATGAATTCGATGTCTTTATGGATGCAGTTAGCCGAAAAATCAGCTTGGACACCCTGGTTGATTTTGCTGTATCACAAGGATCCCAGTGGCTATTCATCACCCCTAATGACACCAGCATGGTGAAGCCCGGACCTAAGGTAAGGAAGCTGCAAATGCCACCTCCTCGTTCTTGA 3186 0.4027 MGESTARVFPNLQYEQQPQYTAGIIKKIRLENFMCHENFEMEFGENVNFVLGQNGSGKSAILAALCIAFGSRAKGTDRAKHLKDFIKTGCSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISESTCSIILKDHQGKRVVHRMADLREMVEHFNIDVDNPCVIMNQDKSREFLHSGNIKDKFKATLLQQVNDLLETISKEIGVAHGIVNDLEGSIKPIEKELNELQAKIKAMEHIEQMSAEVKKLKNKLAWSWVYDVDKKLEAKSAMIDKLKNRIPACQEKINQQLLKIETLKEGISKRKDEIAIMTEKYTQLKQIIADQSQLWPLAEKEVLVLEQDCNSKTSQIQKMLQRLKKLEQDVQDLHELDVKNTQAENYDLEEKLEGLQLEVRAAELEWERLNEEETMLANNINKQKEEIQTITDKIRDHENNCKQISKKIYDFQQRQCNKISAFGGDRVMELMRLIDRDHRKFGVPPIGPIGVHLNLLDAEKWADTVEHAVGGMLNSFIVNDHKDFLLLKKLAKEAKYYKLRIIIYNFEIERLKIPQHLLPQTKHPSTLSLLQSENHTVMNVLVDIGNVERQVLVKDYETGKVVAFEQKPRNVKEVYSADGRKMFSRGNVETTIPLQSNGPGRLCSSFEDYIKDLRSKASDEQNAVNEGKSSKQQAEIKLRELESDPTRVKRRRDCEKAGRTLYSKKLALEEAMNQRAGENSSIPLSSVEELRVEITELEKKLEEEKVLLEALRQRKDEASGKAKDLKVKFDKLRESAEKKFAAMEKAGTECSEIENELKLAEKGKAHYESLMANTVLPAIKTAEEEYHELTKMREENAEKASKICPENEANGCGSLEGSDMKTPEQISAELGELTQKVERECQRHSEPIADLRILYEKKERKIKKKQQMYKALRQKMDACQKALGIRGVKFKKNANYLKQQLSWKFNDHLRKKGISGLIKVNYEEKTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVSQGSQWLFITPNDTSMVKPGPKVRKLQMPPPRS 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121468g00001 1061 Gene3D - 24 175 IPR027417 -
Stsc121468g00001 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 1040 IPR027417 -
Stsc121468g00001 1061 Coils Coil 808 828 - -
Stsc121468g00001 1061 Coils Coil 653 673 - -
Stsc121468g00001 1061 Coils Coil 409 436 - -
Stsc121468g00001 1061 Coils Coil 338 365 - -
Stsc121468g00001 1061 Coils Coil 772 792 - -
Stsc121468g00001 1061 Coils Coil 713 764 - -
Stsc121468g00001 1061 Coils Coil 208 248 - -
Stsc121468g00001 1061 Pfam RecF/RecN/SMC N terminal domain 25 1043 IPR003395 -
Stsc121468g00001 1061 Coils Coil 877 911 - -
Stsc121468g00001 1061 Gene3D - 184 324 - -
Stsc121468g00001 1061 Gene3D - 808 1049 IPR027417 -
Stsc121468g00001 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 16 1060 - -
Stsc121468g00001 1061 Coils Coil 367 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121468g00001 Stsc-Chr121468 6427 25260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121468g00001 22 1061 Structural Maintenance of Chromosomes family AT5G61460 53.352 0.0 1088
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121468g00001 K22804 - gmx:100816916 1250.34