Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121457g00001 ATGGATCATCATCTTCATCGTCAAGGAAGTGATGAACCTTCTACAACAACCAAAGTTGAAAGAAGGATCATAGAGAGAAACAGAAGGAATCATATGAAGGACCTCTACTCCAAACTCAACTCTCTTCTCCCAACCTATAGCCCTACGGAAGTGTTGCCATTGCCTGATCAAATAGATGAGGCTGTGAAATACATCAAAAGCTTGGAGAAGAAGCTGAAGACGGAGAAGGAGAAGAAGGAGAGGTTGTTAATGGGGAGGAATAATAACAATAAGAGATCTCGTGGTGGTGGCTTCGATTATGAGAGCAATAGTAATAATATTACAAAATCTGCAAAGATTGATGTTCATGAAATTGGTAATTCCTTGCTACAAGTGGTTTTGACATGCGGGTTTGAGAACAAGTTCCTTTTCAATGAGATCATTCGCATATTGCATGAAGAGAAGGTTGAGGTTGTTAGTGCCAATTATTCTTCACAACCTGGAGATTCAATGATTCATGTTTTGCATGCAGAGATTCCTTCGGCATTGCAGCAATTTGGAGCGGCAAGAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCCACCAGTGATGTGGAAATAGAGCCAGGGTTTTGGGATGATTTTGAAATTGATACTCAGATTTGGGAGCTTCCAGATCTTTCATCAGTAGTGAGCAAGGGTTTTCCAAATCCTTTGTAA 702 0.4031 MDHHLHRQGSDEPSTTTKVERRIIERNRRNHMKDLYSKLNSLLPTYSPTEVLPLPDQIDEAVKYIKSLEKKLKTEKEKKERLLMGRNNNNKRSRGGGFDYESNSNNITKSAKIDVHEIGNSLLQVVLTCGFENKFLFNEIIRILHEEKVEVVSANYSSQPGDSMIHVLHAEIPSALQQFGAARVSERLKRFVNGSTSDVEIEPGFWDDFEIDTQIWELPDLSSVVSKGFPNPL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121457g00001 233 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 15 192 - -
Stsc121457g00001 233 Coils Coil 58 85 - -
Stsc121457g00001 233 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121457g00001 233 SMART finulus 22 74 IPR011598 GO:0046983
Stsc121457g00001 233 MobiDBLite consensus disorder prediction 76 103 - -
Stsc121457g00001 233 MobiDBLite consensus disorder prediction 88 103 - -
Stsc121457g00001 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 85 IPR036638 GO:0046983
Stsc121457g00001 233 Pfam Helix-loop-helix DNA-binding domain 19 69 IPR011598 GO:0046983
Stsc121457g00001 233 Gene3D - 9 94 IPR036638 GO:0046983
Stsc121457g00001 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 16 68 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121457g00001 Stsc-Chr121457 9780 10802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121457g00001 19 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.444 5.42e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121457g00001 HLH 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121457g00001 - - aip:107610492 239.58